Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1074 ATGTCATCGCTTCAAGATGACCAGCTTAATCAATTACGGGACATTTTCGCGCGCTTCGACATGGACTCCGATGGCAGCCTCACCATCCTCGAGCTTGCCGCGCTCCTTCGGTCCCTTGGCATCAAGCCCTCCGGCGACCAGATCCACGTTCTATTATCCACCATGGACGCCAACGGCAACGGCTCCGTTGAATTCGACGAACTGGTCTCTGCAATTTTGCCCGACATGAATGAAGACGTATTGTTGAATCAAGGGCAGCTCTTAGAGGTTTTCAAGTGCTTCGATCGCGACGGTAACGGCTATATATCGGCCGTGGAGTTAGCTGGCGCGATGGCGAAAATGGGCCAGCCATTGACCTATCGAGAGCTCTCGGAGATGATCCAAGAGGCCGACACAGACGGCGATGGCGTCATTAGCTTCAACGAGTTCACCACCGTGATGGGTAGGTGCGCCTCTCAGTCATTGGGCCTTGCAATGTTATCTAGAGGTTGA 492 0.5366 MSSLQDDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGIKPSGDQIHVLLSTMDANGNGSVEFDELVSAILPDMNEDVLLNQGQLLEVFKCFDRDGNGYISAVELAGAMAKMGQPLTYRELSEMIQEADTDGDGVISFNEFTTVMGRCASQSLGLAMLSRG 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1074 163 ProSitePatterns EF-hand calcium-binding domain. 56 68 IPR018247 -
Dere03g1074 163 SMART efh_1 122 150 IPR002048 GO:0005509
Dere03g1074 163 SMART efh_1 47 75 IPR002048 GO:0005509
Dere03g1074 163 SMART efh_1 11 39 IPR002048 GO:0005509
Dere03g1074 163 SMART efh_1 86 114 IPR002048 GO:0005509
Dere03g1074 163 ProSitePatterns EF-hand calcium-binding domain. 95 107 IPR018247 -
Dere03g1074 163 ProSiteProfiles EF-hand calcium-binding domain profile. 43 78 IPR002048 GO:0005509
Dere03g1074 163 PANTHER CALCIUM BINDING PROTEIN 86 147 - -
Dere03g1074 163 FunFam Probable calcium-binding protein CML16 1 153 - -
Dere03g1074 163 CDD EFh 86 147 IPR002048 GO:0005509
Dere03g1074 163 ProSitePatterns EF-hand calcium-binding domain. 131 143 IPR018247 -
Dere03g1074 163 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Dere03g1074 163 Pfam EF-hand domain pair 10 71 IPR002048 GO:0005509
Dere03g1074 163 Pfam EF-hand domain pair 86 147 IPR002048 GO:0005509
Dere03g1074 163 Gene3D - 1 151 - -
Dere03g1074 163 SUPERFAMILY EF-hand 3 147 IPR011992 -
Dere03g1074 163 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
Dere03g1074 163 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Dere03g1074 163 ProSiteProfiles EF-hand calcium-binding domain profile. 118 153 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1074 Dere-ChrDere03 17114189 17114680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1074 6 159 EF-hand Containing Proteins AT1G18530 74.675 8.49e-85 244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g1074 03 17114189 17114680 Dere03g1074 03 17114189 17114680 ECH