Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1063 ATGAAAAGAGAAACCTCAGCAAGGTTAGGGCTTTGCGTGACTTCGTTTCTCGGTCGAGTATCTTGGTTGGAGTTGCAGAGACTGCGAGAGGTCACGATGCCTACAGTAAGTGTGGGACGGGATCGTTTGTTTGAAGCTTTAGGGAGGACTTACACGCAAGAGGAATTTGAAGACTTGTGCTTCAGTTTTGGGATTGAGCTAGATGACGTCACTACAGAGAAAGCGATTGCGAGAAAAGAAAAGCATATGGAAGAAGAAGCTGGTGAAGACGAAGAAGTTATCTACAAAATCGAAGTTCCCGCCAATAGATATGACCTGCTCTGCCTTGAGGGGCTTGCTCAGGCCCTCCGAGTTTTCTGTGGGAGCCAGGAGATCCCTACATATAGATTGGCTGACACTAGTAAGGATGCAATTCTCAAAATGCATGTGAAGCCAGAGACATCTTTGATTCGTCCATATGTTGTCTGTGCTGTATTGAGAGGTATAACTTTTGATAAAGCAAGATACAACAGCTTTATTGATCTTCAAGACAAGCTTCACCAAAATATTTGCCGGAGAAGAACTCTTGTTGCAATTGGCACTCATGATCTGGATAAATTGGAAGGCCCTTTCACTTACGAGGCTTTACCACCTTCAAGTATAAATTTTACTCCGCTGAAGCAGGAAAAGAATTTTAGGGCTGATGAGCTGATGGAGTTCTATAAATCAGATATGAAGCTGAAGAAATTCTTGCATATAATTGAGGGCTCCCCAGTCTTTCCTGTTATATATGACTGTAAAAGAACTGTTTTATCTTTACCCCCAATTATCAATGGTGCACACTCGGCCATCACTCTGGAGACAAAGAATGTATTTATTGAATGTACTGCCACTGATTTATCGAAGGCGAAGATTGTTTTAAATACAATGGTAACAACCTTCTCAGAATACTGTGAAAATAAGTTTGTAATCGAACCAGTTGAAGTGATTTATTCTGATGGCAAGGCATACATATATCCTGATTTATCTGTCTACAATATGGAGGTTAATCTATCTTACATTAATGGATTGATTGGGGTATCATTGGAGGCAGAAGAGGTCACTGGGCTATTAAATCGGATGCAATTGCATGCTAAACACACTGTGTCTGGAAATAAACATAACAACATTGTTGTATCTGTCCCTCCTACCAGAAGTGATGTTCTTCACCCATGTGATGTTATGGAGGATGTTGCAATTGCTTATGGATTCAATGCTATTAAGGACAAAGCAACTGTAGATAATAAGGGCTCAAAGAGATTAGCTGCTTCCTTGACACTACTTCCTTTGAATGAGCTCAGTGAACTTATCAGAACGGAGGTTGCAATGATCGGGTTCACAGAGGTCTTGACATTTATACTTTGCTCTTATAAGGAAAATTTTGGCATGTTAAATCGAAAAGATGATAAATCAACAGCAGTTATCATTGGAAACCCTAGGTCGTCAGATTTCGAGGCTGTCCGGACTAGTCTTATGCCTGGTATGTTGAAAACTGTTGCTCACAACAAAGACCATCCAAAGCCTATAAGGATTTTTGAAGTTGGTGATGTAGTATTATTGGATGACACAAAAGATGTTGGTGCAAGAAATCGTCGCCAACTTGCTGCAATATACTGTGGTGCTAATGCGGGATTTGAGATTATTCATGGCTTGGTGGACAGAGTGATGGAAAAGAACGGGGTTCCTTTTGTTTCACCTGGTGATAGAACAGGTTATTATATTGAGCAGTCAGATGAACCTGAGTTTCTTCTGCGTAGACAAGCTAGAATCATTAGCAGAGGAAAGCACATTGGAACTTTTGGCATTGTTCACCCAGAGGTATTAAGCAACTTCGACATACCTGATCCATGCTCCTTTGTAGAACTCAACATTGAGAGTTTCTTATAG 1905 0.4068 MKRETSARLGLCVTSFLGRVSWLELQRLREVTMPTVSVGRDRLFEALGRTYTQEEFEDLCFSFGIELDDVTTEKAIARKEKHMEEEAGEDEEVIYKIEVPANRYDLLCLEGLAQALRVFCGSQEIPTYRLADTSKDAILKMHVKPETSLIRPYVVCAVLRGITFDKARYNSFIDLQDKLHQNICRRRTLVAIGTHDLDKLEGPFTYEALPPSSINFTPLKQEKNFRADELMEFYKSDMKLKKFLHIIEGSPVFPVIYDCKRTVLSLPPIINGAHSAITLETKNVFIECTATDLSKAKIVLNTMVTTFSEYCENKFVIEPVEVIYSDGKAYIYPDLSVYNMEVNLSYINGLIGVSLEAEEVTGLLNRMQLHAKHTVSGNKHNNIVVSVPPTRSDVLHPCDVMEDVAIAYGFNAIKDKATVDNKGSKRLAASLTLLPLNELSELIRTEVAMIGFTEVLTFILCSYKENFGMLNRKDDKSTAVIIGNPRSSDFEAVRTSLMPGMLKTVAHNKDHPKPIRIFEVGDVVLLDDTKDVGARNRRQLAAIYCGANAGFEIIHGLVDRVMEKNGVPFVSPGDRTGYYIEQSDEPEFLLRRQARIISRGKHIGTFGIVHPEVLSNFDIPDPCSFVELNIESFL 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1063 634 SMART B3_4_2 150 312 IPR005146 GO:0003723|GO:0004826
Dere03g1063 634 FunFam Phenylalanine--tRNA ligase beta subunit 33 121 - -
Dere03g1063 634 CDD PheRS_beta_core 435 633 IPR041616 -
Dere03g1063 634 ProSiteProfiles B5 domain profile. 335 415 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Dere03g1063 634 SUPERFAMILY Putative DNA-binding domain 37 126 IPR009061 -
Dere03g1063 634 Pfam B3/4 domain 151 312 IPR005146 GO:0003723|GO:0004826
Dere03g1063 634 NCBIfam phenylalanine--tRNA ligase subunit beta 33 634 IPR004531 GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432
Dere03g1063 634 Pfam Phe-tRNA synthetase beta subunit B1 domain 33 121 IPR040659 -
Dere03g1063 634 Pfam Phenylalanyl tRNA synthetase beta chain CLM domain 435 630 IPR041616 -
Dere03g1063 634 SUPERFAMILY Putative DNA-binding domain 339 414 IPR009061 -
Dere03g1063 634 FunFam Phenylalanyl-tRNA synthetase, beta subunit 338 413 - -
Dere03g1063 634 SUPERFAMILY PheT/TilS domain 251 314 - -
Dere03g1063 634 FunFam phenylalanine--tRNA ligase beta subunit 434 634 - -
Dere03g1063 634 SMART B5_2 337 410 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Dere03g1063 634 SUPERFAMILY Class II aaRS and biotin synthetases 407 633 IPR045864 -
Dere03g1063 634 PANTHER PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 33 634 IPR045060 GO:0004826|GO:0006432
Dere03g1063 634 Gene3D - 338 413 - -
Dere03g1063 634 FunFam phenylalanine--tRNA ligase beta subunit 132 336 - -
Dere03g1063 634 Gene3D - 33 120 - -
Dere03g1063 634 Pfam tRNA synthetase B5 domain 340 410 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Dere03g1063 634 Gene3D Bira Bifunctional Protein; Domain 2 434 634 IPR045864 -
Dere03g1063 634 Gene3D - 132 336 IPR020825 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1063 Dere-ChrDere03 16889479 16899812 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g1063 03 16889479 16899812 Dere03g1063 03 16889479 16899812 ECH