Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0642 ATGGAAGGAGAAGACGGGATTCAGCAGCCACAGTTGGTGCTAGCTCACAAGCTCTTCCTTCTCAGACATGGCGATGTCCAAGACATCGAGAAGGTCCGGCTCAGAGATGAGGTTTTTACGTATGTCAAAGAAAATGATATGGTGCCTTTATACGAAACCCTAGTCGCTGATTCGGTATTGGATATGGATCGAAGCGTTTTAGATTCGATGCGTGCTAAAATAGATGAGGAGCTCAAGAAGCTTGACGAAAAGATTGCCGATGCTGAAGAAAACTTAGGTGAGAGTGAAGTTCGAGAGGCTCACTTGGCAAAATCCTTGTTCTTCATCAGGATTGGTGATAAGGAGAAAGCCTTGGAGCATCTCAAGTTAACAGAAGGCAAGACAGTTGCAGTTGGACAGAAGATGGACCTGGTGTTTCATACCTTGCAGCTTGGCTTTTTTGACATGGATTTTGATCTCATTTCCAAAAGCATTGACAAAGCTAAAAACTTGTTTGAGGAAGGTGGTGACTGGGAAAGAAAGAATCGGCTCAAAGTGTATGAAGGCCTGTACTGCATGTCCACACGAAATTTCAAGAAGGCTGCCAATTTGTTTTTGGATTCTATCTCAACTTTTACAACTTATGAACTTTTTCCCTATGACACCTTTATATTTTACACAGTTTTGACCAGCATTATATCATTGGATAGAGTTTCCCTGAAGCAAAAGGTAGTGGATGCTCCTGAGATCTTGACCGTGATTGGCAAAATCCCATACCTTTCAGAGTTCTTAAACTCCCTATATGATTGTCGGTACAAGTCATTTTTCTCTGCATTTGCTGGCCTGACAGAGCAAATTAAGTTGGACCGCTACTTGCATCCACACTTTCGATATTACATGAGGGAGGTTAGAACTGTGGTTTATTCCCAGTTTTTGGAGTCTTACAAGAGTGTTACTATTGAGGCAATGGCAAAAGCATTTGGAGTGACTGTGGATTTCATTGATTTGGAGCTATCTCGTTTTATTGCTGCTGGGAAACTTCATTGTAAGATTGATAAAGTTGCAGGCGTTCTTGAAACAAACCGTCCTGATGCTAAGAATGCTCTTTACCAGGCAACTATCAAGCAAGGGGACTTCCTGTTGAACCGAATTCAAAAGTTGTCCCGTGTAATTGATCTTTAG 1161 0.4186 MEGEDGIQQPQLVLAHKLFLLRHGDVQDIEKVRLRDEVFTYVKENDMVPLYETLVADSVLDMDRSVLDSMRAKIDEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKEKALEHLKLTEGKTVAVGQKMDLVFHTLQLGFFDMDFDLISKSIDKAKNLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAANLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCRYKSFFSAFAGLTEQIKLDRYLHPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVDFIDLELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0642 386 Coils Coil 67 98 - -
Dere03g0642 386 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 287 370 IPR000717 -
Dere03g0642 386 FunFam 26S proteasome regulatory subunit N7 11 337 - -
Dere03g0642 386 SUPERFAMILY "Winged helix" DNA-binding domain 282 363 IPR036390 -
Dere03g0642 386 Pfam 26S proteasome subunit RPN7 63 236 IPR045135 -
Dere03g0642 386 ProSiteProfiles PCI domain profile. 190 358 IPR000717 -
Dere03g0642 386 PANTHER 26S PROTESOME SUBUNIT 6 11 386 IPR019585 -
Dere03g0642 386 Pfam PCI domain 254 354 IPR000717 -
Dere03g0642 386 Gene3D - 9 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0642 Dere-ChrDere03 10540364 10544178 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0642 03 10540364 10544178 Dere03g0642 03 10540364 10544178 ECH