Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0520 ATGTGCCCCTCTGCAGCCTCCAAGTTCCAATGTCGCCATACCATAATATCACAAATTACAATCACAATCACAACCTTCTCTGATTTCAATCTGGAGGCCAACTCATCTTCGCTGCTTCTCTGTCTCTCTCTCTCTCTCTGCGGTTCAGGCGAAGACCAATGCAAAAGCAGAGATTCAGCAATGGAGACAGAGGCGGTGAAGAAGAGTACTAAGAAATCATCAACATCAGAGTCCAAAGAAGATTTAGCGAATACAATGGAAGAAGAAGAAGAAGAAGCAAAAGCGCAAGTGGAGGTTGTAGATGAAGGCGGTGTGGGAAACAGCACTGAAGCTGAGTGCACCAAGATCCCTCTCATGAGAGCTTTCGTTGAATCCAAGGATCCCTCTGCTAAGGAAGTAGATGATTTGATGATTAGAAGATTCTTGCGTGCTCGTGATTTAGATATAGAGAAGGCTTCGGCAATGTTCCTCAAGTACTTGAAATGGAAACGATCATTTGTTCCAAATGGCTTTATATCTCCATCAGAGATTCCCAATGAGCTAGCTCATAACAAGGTGTGCCTGCAAGGCGTCGATAAGAAAGGACGACCTATAGTAGTTGCCTTCGGTGCAAGACATTATCAAAACAAAGATGGCATGGATGAATTCAAACGACTTGTGGTCTACATTCTTGAAAAACTGTGTTCAAGGATACCACCAGGGCAAGAAAAGTTTGTAGCTATAGGAGATCTTCAGGGATGGAGATATGCAAACAGTGACGTACGTGGATACCTTGCTGCTCTATCCATTTTACAGGATTACTACCCAGAAAGACTGGGGAAGCTGTTTATAGTGCATGCGTCCACCATATTTATGACAGTATGGAAGATTATATACCCCTTTATTGACAACAACACCAAGAAGAAGATAGCATTCGTGGAGAAGAGTAAGATCAAATCAACACTGCTGGAAGAAATAGACGAAAGCCAGATCCCAGAGATATACGGAGGCCAACTTCCACTAGTTCCGATCCAGGATAGCTAA 1023 0.433 MCPSAASKFQCRHTIISQITITITTFSDFNLEANSSSLLLCLSLSLCGSGEDQCKSRDSAMETEAVKKSTKKSSTSESKEDLANTMEEEEEEAKAQVEVVDEGGVGNSTEAECTKIPLMRAFVESKDPSAKEVDDLMIRRFLRARDLDIEKASAMFLKYLKWKRSFVPNGFISPSEIPNELAHNKVCLQGVDKKGRPIVVAFGARHYQNKDGMDEFKRLVVYILEKLCSRIPPGQEKFVAIGDLQGWRYANSDVRGYLAALSILQDYYPERLGKLFIVHASTIFMTVWKIIYPFIDNNTKKKIAFVEKSKIKSTLLEEIDESQIPEIYGGQLPLVPIQDS 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0520 340 SUPERFAMILY CRAL/TRIO N-terminal domain 103 170 IPR036273 -
Dere03g0520 340 MobiDBLite consensus disorder prediction 58 97 - -
Dere03g0520 340 MobiDBLite consensus disorder prediction 58 82 - -
Dere03g0520 340 Coils Coil 72 99 - -
Dere03g0520 340 Gene3D - 56 339 IPR036865 -
Dere03g0520 340 Pfam CRAL/TRIO domain 183 330 IPR001251 -
Dere03g0520 340 CDD SEC14 188 331 IPR001251 -
Dere03g0520 340 SMART CRAL_TRIO_N_2 134 159 IPR011074 -
Dere03g0520 340 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 174 336 IPR001251 -
Dere03g0520 340 SUPERFAMILY CRAL/TRIO domain 175 333 IPR036865 -
Dere03g0520 340 PANTHER OS03G0850700 PROTEIN 105 339 - -
Dere03g0520 340 SMART sec14_4 179 333 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0520 Dere-ChrDere03 9052745 9054697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0520 140 326 Acyl Lipid Metabolism Gene Families AT1G55840 27.488 8.15e-12 63.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0520 03 9052745 9054697 Dere03g0520 03 9052745 9054697 ECH