Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0393 ATGCAGCTTCGCACTATCTCTCGCTCTCCTTGTTCTTCTGGAAATGTGTTATATCTGGGGGGTCATCATGTAAGCAAGTGGAAGACTTATAATGGGTGCGATTTGGATATGAGACTTTATGTAGATAGATTCTTTCATAAGAATCAAAAGGGTAGTAAGAGATATATCTCAAAATGTATAGGAGCACCCTTATCCTGTTCAGCTGCCGTTAGGAGTGATTCCTTTCTGCCTTCTAACGAGCAACTAAGTGGTGCACGATTGATATATTCTGTTGCTCCAGCCATGGGCCACAACCAGGAATCTCATCCAGAATCACATTTTAGGGTTCCTGCAATTGTGAATGCTCTTGAAGAACTGAAGCTCACTTCGAAGTTCCGTGGTTCTGAGATCATCAAACTTGAAAATTTTGAGCCTGCCTCCGTAGATGATGTAGCAAGTGTTCATGCAAGAGCCTATGTATATGGCCTTGAGAAGGCTATGGATCAAGCTTCAGAGAAAGGCCTTATATTTATTGATGGATCTGCACCAACATATGCTACTGCCACTACGTTCCAGGAGTCATTGGTTGCAGTTGGAGCTGGATTAGCTTTAGTTGACTCAGTGGTTGCAGCTTCAAAGAACAGCAGAGATCCACCCACTGGTTTTGCTTTGATAAGGCCACCAGGACATCATGCTGTTCCAAAAGGGCCTATGGGCTTCTGTGTTTTCGGAAATGTGGCCATTGCAGCTCGTTATGCTCAACGTGTACATGGATTAAAGCGTGTTTTTATAATTGATTTTGATGTCCACCATGGGAATGGAACAAATGATGTTTTCTATGATGATCCAGATATATTTTTCCTTTCAACTCATCAAGATGGAAGCTATCCGGGTACTGGTAAGTTTGATGAGGTGGGAACTGGAGATGGAGAAGGAACCACATTAAATCTGCCTCTTCCAGGAGGCTCAGGTGACACTGCTATGAGAACTGTGTTTGATGAAGTCATCGCACCCTGTGCTCAAAGGTTTAAGCCAGACATTATTCTTGTTTCTGCTGGATATGATGCTCATGTGCTGGATCCACTGGCTAATCTACAATGTACAACCGCAACATACTACACGCTTGTGTCCAACATAAAACAATTAGCAAAAGAACTATGTGGGGGCCGATGTGTGTTTTTCTTGGAGGGAGGATATAATCTCAAGTCTCTTTCATATTCAGTGGCTGACTCATTCCGTGCTCTTCTCGGTGATCGGAGCTTGGCATCTGAGTTTGATGACCCAAACATTCTGTATGAAGAGCCATCAACAAAGGTTAAGCAAGCAATCCAGAGGATAAAATCCATACATTCCCTGTGA 1338 0.4312 MQLRTISRSPCSSGNVLYLGGHHVSKWKTYNGCDLDMRLYVDRFFHKNQKGSKRYISKCIGAPLSCSAAVRSDSFLPSNEQLSGARLIYSVAPAMGHNQESHPESHFRVPAIVNALEELKLTSKFRGSEIIKLENFEPASVDDVASVHARAYVYGLEKAMDQASEKGLIFIDGSAPTYATATTFQESLVAVGAGLALVDSVVAASKNSRDPPTGFALIRPPGHHAVPKGPMGFCVFGNVAIAARYAQRVHGLKRVFIIDFDVHHGNGTNDVFYDDPDIFFLSTHQDGSYPGTGKFDEVGTGDGEGTTLNLPLPGGSGDTAMRTVFDEVIAPCAQRFKPDIILVSAGYDAHVLDPLANLQCTTATYYTLVSNIKQLAKELCGGRCVFFLEGGYNLKSLSYSVADSFRALLGDRSLASEFDDPNILYEEPSTKVKQAIQRIKSIHSL 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0393 445 SUPERFAMILY Arginase/deacetylase 98 412 IPR023696 -
Dere03g0393 445 Gene3D Histone deacetylase domain 76 444 IPR037138 -
Dere03g0393 445 CDD HDAC_classII 102 409 - -
Dere03g0393 445 PANTHER HISTONE DEACETYLASE 9-RELATED 97 444 IPR017320 GO:0000118|GO:0004407|GO:0006325|GO:0016575
Dere03g0393 445 Pfam Histone deacetylase domain 102 407 IPR023801 -
Dere03g0393 445 PRINTS Histone deacetylase superfamily signature 254 269 IPR000286 -
Dere03g0393 445 PRINTS Histone deacetylase superfamily signature 220 243 IPR000286 -
Dere03g0393 445 PRINTS Histone deacetylase superfamily signature 338 348 IPR000286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0393 Dere-ChrDere03 7610850 7618035 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0393 03 7610850 7618035 Dere03g0393 03 7610850 7618035 ECH