Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0370 ATGAAGGGTGGAACTGTTCAGATAAACTGGCATGAAACCAAACCAGTCCTAACCCTTGATTTCCACCCACTCTCCGCCACTCTCGCCACCGGCGGCGCTGATTTCGACATCAAGCTTTGGTCTGTTAAATCTGCAGAAGCACAAAAGAAGCTACCTTCAGTGTCCTATCTGAATAGCTTGTCTTACCACAGTTCTGCAGTAAATGTAATTCGTTTCTCCTCTTCAGGGGAACTGTTGGCCTCTGGCGCTGATGGAGGTGACCTTATAATATGGAAGTATCATGTGACAGATACAGGTCAGACATGGAAGGTCCTCAAGATGTTAAGGTCTCATCACAAGGACATTCTGGACCTTCAATGGTCTCCTGATGCCTCATGTATCATTTCTGGGTCGGTTGATAATAGTTGCATTATATGGGATGTCAACAAAGGCACCAACCTTCAGACATTGGATGCTCATGCCCATTATGTTCAAGGAGTTGCATGGGATCCTCTAGGAAAATATGTTGCTTCTCTTAGTTCTGACAGGACTTGCCGCATTTACATTAATAAGCCTAAAAAATCTAAAGGAAGCGGGAAAATCAACTATGTTTGTCAACAAGTTATATCCAAGGCAGAACATTCATTACTAGATAATTCTAAGTCAACAAATTATCATCTCTTCCATGATGAGACACTGCCATCTTTCTTTAGAAGACCAGCCTGGTCTCCTGATGGCTCATTTCTACTTGTGCCTGCAGGCTCATACAAAATAACTTCTGGATCTGAATCTGTAAATGCGGCTTACATATTTTCTAGAAAGGATCTCTCTCGGCCTGCCATACAGCTACCTTGCACAAGCAAAGCTGTGGTTGCCGTCCGGTTCTGCCCCATTAATTTTAGCCTTCAGGGAACGAATTCAGCTGGGTTATTTAAGCTCCCTTATCGCATCATTTTTGCTGTGGCCACTTTAAATTCGTTATACATTTATGACACTGAGAGCAATCCTCCAATAGCTATAATGGCTGGTCTTCACTATGCAGCAATAACGGACATTGCATGGTCACCTGATGCCCATTATTTGGCATTGTCCTCTCAAGATGGTTACTGCACTTTGGTGGAATTTGAAAATAACGAACTGGGATTGCCTATCCCTTTATCAGGGGAAAAGAAAGCCTCTGACAAGGATAGTAAGACATCACCGCAGATGTCTGAAAGTTTGGTCACTGAAGCCACTGGGAATGTTAGTGCAATTGAAGTAGAAAGCTCAAAAAATGAAGTACAAGAAAAGGCTGATAACATGATCATTGAATCAACTAGCAATGTTAATGTAGATAATGCAGGAAGCAGGAAAGCTGAAGCAGAAGAGAAGGGTGACCACATGGTCATTGAAGTAACTGCGAATGTTGGGGCAGTTGTAGCAGAAAGCAGCAAAAGTGAAGTAGAATGGAAGGCTGATGACATGGTCATTGAGGAAACTAGCAATGGTGGTGAAGCTGTTGCACAAAGCAGGAAAATTGAAGCAGAAGAGAAGGTTGTCATGGTCCTTCATTCAATTGGAAATGTTGGTGCAGTTGTAACAGATAGCAGTAAAAATGAAGCAGAAGATAAAACAGAGAAACAGTTACTGAGTTCACATAGTGTGAAATCTGAAGCAAAAGAGAATGCTGAGAAACATCCATTTAGTTTAGATGGTGTAAGAAAAGAAGCTGAAGAGAAGACAGAGAAACAAGCATCTAACTTGGATAGTTTTAAAACTGAAGCAGAAGAGAAGGTAGCATGTAGTTCAAGGGGTATGCCCACGTCAGATAAGCCAGGCAAGAAGCGGATAACTCCTATTGCGATTGATTAA 1830 0.4208 MKGGTVQINWHETKPVLTLDFHPLSATLATGGADFDIKLWSVKSAEAQKKLPSVSYLNSLSYHSSAVNVIRFSSSGELLASGADGGDLIIWKYHVTDTGQTWKVLKMLRSHHKDILDLQWSPDASCIISGSVDNSCIIWDVNKGTNLQTLDAHAHYVQGVAWDPLGKYVASLSSDRTCRIYINKPKKSKGSGKINYVCQQVISKAEHSLLDNSKSTNYHLFHDETLPSFFRRPAWSPDGSFLLVPAGSYKITSGSESVNAAYIFSRKDLSRPAIQLPCTSKAVVAVRFCPINFSLQGTNSAGLFKLPYRIIFAVATLNSLYIYDTESNPPIAIMAGLHYAAITDIAWSPDAHYLALSSQDGYCTLVEFENNELGLPIPLSGEKKASDKDSKTSPQMSESLVTEATGNVSAIEVESSKNEVQEKADNMIIESTSNVNVDNAGSRKAEAEEKGDHMVIEVTANVGAVVAESSKSEVEWKADDMVIEETSNGGEAVAQSRKIEAEEKVVMVLHSIGNVGAVVTDSSKNEAEDKTEKQLLSSHSVKSEAKENAEKHPFSLDGVRKEAEEKTEKQASNLDSFKTEAEEKVACSSRGMPTSDKPGKKRITPIAID 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0370 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 92 IPR001680 GO:0005515
Dere03g0370 609 ProSitePatterns Trp-Asp (WD) repeats signature. 127 141 IPR019775 -
Dere03g0370 609 Coils Coil 560 580 - -
Dere03g0370 609 MobiDBLite consensus disorder prediction 521 609 - -
Dere03g0370 609 PRINTS Beta G protein (transducin) signature 164 181 IPR001632 -
Dere03g0370 609 PRINTS Beta G protein (transducin) signature 108 124 IPR001632 -
Dere03g0370 609 PRINTS Beta G protein (transducin) signature 127 141 IPR001632 -
Dere03g0370 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 92 - -
Dere03g0370 609 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 609 IPR045145 GO:0006335
Dere03g0370 609 SUPERFAMILY WD40 repeat-like 11 365 IPR036322 GO:0005515
Dere03g0370 609 FunFam Chromatin assembly factor 1 subunit FAS2 4 250 - -
Dere03g0370 609 Gene3D - 198 445 IPR015943 GO:0005515
Dere03g0370 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 50 IPR001680 GO:0005515
Dere03g0370 609 SMART WD40_4 143 182 IPR001680 GO:0005515
Dere03g0370 609 SMART WD40_4 3 41 IPR001680 GO:0005515
Dere03g0370 609 SMART WD40_4 327 367 IPR001680 GO:0005515
Dere03g0370 609 SMART WD40_4 101 140 IPR001680 GO:0005515
Dere03g0370 609 SMART WD40_4 269 324 IPR001680 GO:0005515
Dere03g0370 609 SMART WD40_4 53 92 IPR001680 GO:0005515
Dere03g0370 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 150 181 IPR001680 GO:0005515
Dere03g0370 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 149 IPR001680 GO:0005515
Dere03g0370 609 MobiDBLite consensus disorder prediction 523 585 - -
Dere03g0370 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 144 - -
Dere03g0370 609 MobiDBLite consensus disorder prediction 379 403 - -
Dere03g0370 609 Gene3D - 4 197 IPR015943 GO:0005515
Dere03g0370 609 Pfam WD domain, G-beta repeat 103 140 IPR001680 GO:0005515
Dere03g0370 609 Pfam WD domain, G-beta repeat 144 181 IPR001680 GO:0005515
Dere03g0370 609 Pfam WD domain, G-beta repeat 58 92 IPR001680 GO:0005515
Dere03g0370 609 Pfam WD domain, G-beta repeat 11 41 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0370 Dere-ChrDere03 7348490 7354099 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0370 25 181 Miscellaneous Gene Families AT5G08390 26.752 1.01e-13 72.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0370 03 7348490 7354099 Dere03g0370 03 7348490 7354099 ECH