Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0354 ATGGCGGGACAGGATGCCGAACTGAAGGCCGCGACGACGGCGTATCGGAATGCGAAGGCGGAGGAGAACAGGCAGGAGGAGGCCCGGTGGGCGAACCTGATCGGGAATATATTGAAGAACAGAGGAGAGTACGTTGAGGCCCTCAAATGGCTTCGAAGAGACTATGAGATTTCTCTCAAATATTTGCCTGAGAAGCATTTGCTCCCCACCTGTCAGTCTCTAGGAGAGATTTATCTTCGGCTTGAGCGTTTCAGCGATGCACTAACATATCAGAAAAAGCACTTGGAGCATGCAAGGGATGCTAATGACCTTGTTCAGCAGCAAAGGGCCAGCACCCAACTCGGTCGTACTTATCATGAATTATTTTCAAGATCAGAACATGACCATCTCTCAATACGAAATGCAAAAAAGTATTTTAAGTCTGCCATGGAGCTCGCACAAATACTTAAGGAGGACCCGCCAACTAATAAGTCTTCCTTTGTCAAGGAATATATTGATGCACACAATAATATAGGAATGCTGGAAATGGAACTTGATAACTTGGAAGGGGCTCAAAAGATCCTAACCAGAGGACTAGAGATTTGCAATGAAGAAGAGGTCAGTGAAGATGATGACGGACGCAGCAGGCTCCATCATAACCTTGGAAATGTGTATATGGAATTGAGGATGTGGGAAAAAGCTAGAAAAAATATTGAGAAGGACATTCAGATTTGTAATAGAATTGGACATTGTCAAGGGGAAGCAAAGGGCTATATTAATCTTGGTGAAGTGCATTACAGGACTCAGAAATATGATGAAGCACTTTCTTATTACGATAAGGCACTTACTCTGGCAAAATCCATGGAAGACGAGGATGCATTGGTTAGGCAAATTGATCAAAATATCAAAACCGTAAATGAAGCTATCAAAGTGATGGCTGAATTAAAAAAAGAAGAGCAGAACTTAAAAAAGCTTAAAAGAAAATTGGCCGCTGCAAGAGGCACAGCACATGAGCGCAAATGTCTTCTGCAGCAAAATGTGTCTCTGGATCGCCTTCTTGAGAAATCAAGTATTATCTTCGCATGGGAGAAGCATTGTCAATTTGCAAAGGAGAAGAAAGAAATAGCAACTGAATTGTGTGACAATGAAAGGCTGAGTGATTCATATCTGGCTTTTGGAGAATCATACCAGAAGCTCAGAAATTTCAATGAAGCGATCAAATGGTACAAAAAGAGCTGGGAAATGTACAAAACAATTGGTAATTTAGAGGGGCAAGCACTGGTGAAAATTGATATTGGTAATGTTTTGGATTCTGTTCACAATTGGAAAGGAGCACTAGATGCATATGAACAGAGCTACAGGATTGCTGTTGAAGCTAACCTTCCTTCTGTACAGCTTTCTGCCCTGGAAAACATGCACTATAGCAACATGATAAGATTTGATAATGAGAATGAGACGAGGCTGAAGAAATCAATAGATAAAGACCCTGGAACAAAAAATATACCAGAGTATTGCTGCTCTGAGACTGACACTGAAGTAGATGATCATCTATCCAATAGTGGGTCTGATGACTTCTCTCCAAAGTGTAGATCAAAAATGGTGACTACTGGAGAAGTGTTGAATGATGACGTGCCTCTGATGTCACTCTCTCAGTCCAGAAAAAATTCATCCCAAAAAGCAGGTTACATGGAAAGTTTTAGCAACTCTACCAAGCAACCTCAGAAGTCACCTAGAAGTTTGCTGAAAACAACCAGTAATCATCAGAAGGCTGTTGGTAATAAACGTGTCCGTGTAATCCTTTCTGATGATGATGAGGAGGAGGAGAATGACGATGATATGAAGCACTCAAACAGAAAGCCCCACCGCTTAGAGGACTTTGCTACTTCTAATCCACTAAAGAGTAAAAGAAGTGTTGCCAGTCCTGCTGCTAAAGTTCAGGTTTCCTCAGAGTATGGATCCAAGAATGAAATTAACGTTGAAGAAAGCAGTAGTTCTTTCAAATGCCGCAATCCACACAGCACCATGAAAACTGCCAGCAATTCTAGATCTTTGAGCAATGATATAGTTGCTGAACCTGATGTTGCTAGTGGTTCTAAATGTGATACGAATTTCTCTGGCAAACTTTTGCAACATGTTGTTGCCTATCCCATGAAGCGTAGTTCTGAAGAAGATCACGATATCGCAGTCAAGATTGAAAATGATTTGATTTACATAGAAGCAACCTCATTGGTAGCTGGTGATCAGTTGAAGTCTGAAGTTGCATGCTTATATTATCTACAGCTTCCTAGAGAGAAAAGATCTGAAGGTTTGCTGCCCATTATTCAGCATATAAAATGTGCTGGAAGAGATCTGGAATCTCTGGAAACTGTTGAAAATCTTAAGGAACATCTTGGAGATGAAATGGTCGAAGTTTCTATCGATGGATGGGTTCAGAAGCGCTTAATTAAAATGTACATGGACTGCTGTGAGGAGTTATCTGAGGTACCAAATCTCAAGGTACTCAAGAAACTTTACAATTTAGAGGTTTCAGATGATGAGATTATTGTGACTGAGTGCGAGCTGCAAGATTTGTCAGTAACGCCATTGTTAAACGCACTGCTTTCCCACAAGAGATTTGCCATGCTTGACCTCTCTCACAATATGTTAGGAAATGGAACAATGGAGAAACTTCAAAAGGTGTTCACAGCATCTGGCCAAACTTATGGTGGCTTGACACTGGACTTGCATTGCAATCTATTCGGCCCAACTGCATTGTTTCAGATTTGTGAATGCTCAGTCCTCTTTGCTCGACTTGAAGTGCTTAACTTTTCTGGAAACCGTCTTACTGATGCATGTGGATCTTATCTATCAACTATCTTGGAAAAATGCACAGCCCTCTGTAGCTTGAATGTAGAACGTTGTCATATCACATCCAGAACTATCCAAAAGATTGCCGATGCATTGGACTCTAAATCTGTACTCGCACAGCTTTGTATAGGTTATAACAACCCTGTATCTGCAAATGCTATTGTCCGTCTACTGGCCAAGCTTTCTACTTTGAGAAGGTTTTCTGAGCTAAATCTGAACGGTCTAAAATTAGGCAAACCGGTTGTTGATACCCTTTGCCAGCTTGCAGGGACCTTAACTTTATCAGGACTAATGCTTGGAAGCACGGGTATTGGAAATATAGATGTTCTTCTGCAGGAAGGGGCGATCCAATTAGCACAGTCATTGTTCAATGAGACTCAAGAACTTGTGAAACTTGACCTATCATATTGCGGTCTTACATCTAATATTTTTTTAAACGCAGATGCTACTTCATTTTGTTCCATCCTTGAGCTGAAACTGGAAGGAAATCCTATTATGTCAGAGGGCAGCAATACTCTATCTTCTCTGCTCATAAACCCACAGTGCTGTCTAAAAGTTTTAGTCCTTGGAAACTGTCAACTTGGGTTTTCTGGAGTTCTACACATAATTGAGTCACTAGCAGAGAACAATTGCCTGCAGGAGCTTAATCTAGCTGGTAATGCTGATACAAATGAACTTTCTTCCCTGCCATACGACTCCTCGGTACGGGGCTGCTTAGACAACCTGGAGCAGAAACTAGACACTTGTGAGTTTCGTAAGGTAAGTTCACCTATGGAAGTGGACAATACTAAAGAGGGTCTTAGCACTCTGGACACTGATGACCGTAAGCTTGAAGTTGGAAACGATGAAGATAATCCAACGAAAGTAGAAGCTGCTGCTTCTGGAATTGATGACAGTTGTGCCAGTTCATGTCAAAGAAATTCTTCTTCCAAGTGCCATTTCATTCAAAGACTTTCAAACGCTATTGGTCTAGCAAAGTACTTGCAATTTCTTGACCTCAGCGATAATGGTTTCTCTGCGGAAGCTGCAGCAATATTGTATAATTCATGGTCGTCTTTGCGAACCCGTTCAAGTCACATGCATATTACCGATCAGATTGTTCATTTTTCAACCAAAGAAAATAAGTGCTGCAGAGTGAAAGCATGCTGCAAGAAAGATTGA 3987 0.4123 MAGQDAELKAATTAYRNAKAEENRQEEARWANLIGNILKNRGEYVEALKWLRRDYEISLKYLPEKHLLPTCQSLGEIYLRLERFSDALTYQKKHLEHARDANDLVQQQRASTQLGRTYHELFSRSEHDHLSIRNAKKYFKSAMELAQILKEDPPTNKSSFVKEYIDAHNNIGMLEMELDNLEGAQKILTRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWEKARKNIEKDIQICNRIGHCQGEAKGYINLGEVHYRTQKYDEALSYYDKALTLAKSMEDEDALVRQIDQNIKTVNEAIKVMAELKKEEQNLKKLKRKLAAARGTAHERKCLLQQNVSLDRLLEKSSIIFAWEKHCQFAKEKKEIATELCDNERLSDSYLAFGESYQKLRNFNEAIKWYKKSWEMYKTIGNLEGQALVKIDIGNVLDSVHNWKGALDAYEQSYRIAVEANLPSVQLSALENMHYSNMIRFDNENETRLKKSIDKDPGTKNIPEYCCSETDTEVDDHLSNSGSDDFSPKCRSKMVTTGEVLNDDVPLMSLSQSRKNSSQKAGYMESFSNSTKQPQKSPRSLLKTTSNHQKAVGNKRVRVILSDDDEEEENDDDMKHSNRKPHRLEDFATSNPLKSKRSVASPAAKVQVSSEYGSKNEINVEESSSSFKCRNPHSTMKTASNSRSLSNDIVAEPDVASGSKCDTNFSGKLLQHVVAYPMKRSSEEDHDIAVKIENDLIYIEATSLVAGDQLKSEVACLYYLQLPREKRSEGLLPIIQHIKCAGRDLESLETVENLKEHLGDEMVEVSIDGWVQKRLIKMYMDCCEELSEVPNLKVLKKLYNLEVSDDEIIVTECELQDLSVTPLLNALLSHKRFAMLDLSHNMLGNGTMEKLQKVFTASGQTYGGLTLDLHCNLFGPTALFQICECSVLFARLEVLNFSGNRLTDACGSYLSTILEKCTALCSLNVERCHITSRTIQKIADALDSKSVLAQLCIGYNNPVSANAIVRLLAKLSTLRRFSELNLNGLKLGKPVVDTLCQLAGTLTLSGLMLGSTGIGNIDVLLQEGAIQLAQSLFNETQELVKLDLSYCGLTSNIFLNADATSFCSILELKLEGNPIMSEGSNTLSSLLINPQCCLKVLVLGNCQLGFSGVLHIIESLAENNCLQELNLAGNADTNELSSLPYDSSVRGCLDNLEQKLDTCEFRKVSSPMEVDNTKEGLSTLDTDDRKLEVGNDEDNPTKVEAAASGIDDSCASSCQRNSSSKCHFIQRLSNAIGLAKYLQFLDLSDNGFSAEAAAILYNSWSSLRTRSSHMHITDQIVHFSTKENKCCRVKACCKKD 1328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0354 1328 SUPERFAMILY RNI-like 898 1296 - -
Dere03g0354 1328 SUPERFAMILY TPR-like 19 200 IPR011990 GO:0005515
Dere03g0354 1328 Coils Coil 298 328 - -
Dere03g0354 1328 Pfam Tetratricopeptide repeat 208 280 - -
Dere03g0354 1328 Pfam Tetratricopeptide repeat 28 99 - -
Dere03g0354 1328 ProSiteProfiles TPR repeat profile. 379 412 IPR019734 GO:0005515
Dere03g0354 1328 SMART LRR_RI_2 921 948 - -
Dere03g0354 1328 SMART LRR_RI_2 862 889 - -
Dere03g0354 1328 SMART LRR_RI_2 1094 1121 - -
Dere03g0354 1328 SMART LRR_RI_2 1123 1150 - -
Dere03g0354 1328 SMART LRR_RI_2 1267 1294 - -
Dere03g0354 1328 MobiDBLite consensus disorder prediction 655 676 - -
Dere03g0354 1328 ProSiteProfiles TPR repeat region circular profile. 248 277 - -
Dere03g0354 1328 Coils Coil 8 28 - -
Dere03g0354 1328 MobiDBLite consensus disorder prediction 537 633 - -
Dere03g0354 1328 Gene3D Tetratricopeptide repeat domain 3 330 IPR011990 GO:0005515
Dere03g0354 1328 ProSiteProfiles TPR repeat profile. 248 281 IPR019734 GO:0005515
Dere03g0354 1328 Gene3D Tetratricopeptide repeat domain 353 487 IPR011990 GO:0005515
Dere03g0354 1328 SUPERFAMILY TPR-like 158 285 IPR011990 GO:0005515
Dere03g0354 1328 MobiDBLite consensus disorder prediction 538 584 - -
Dere03g0354 1328 SMART tpr_5 28 61 IPR019734 GO:0005515
Dere03g0354 1328 SMART tpr_5 68 101 IPR019734 GO:0005515
Dere03g0354 1328 SMART tpr_5 248 281 IPR019734 GO:0005515
Dere03g0354 1328 SMART tpr_5 165 198 IPR019734 GO:0005515
Dere03g0354 1328 SMART tpr_5 208 241 IPR019734 GO:0005515
Dere03g0354 1328 SMART tpr_5 379 412 IPR019734 GO:0005515
Dere03g0354 1328 SMART tpr_5 419 452 IPR019734 GO:0005515
Dere03g0354 1328 MobiDBLite consensus disorder prediction 604 622 - -
Dere03g0354 1328 Pfam Tetratricopeptide repeat 380 405 IPR019734 GO:0005515
Dere03g0354 1328 SUPERFAMILY TPR-like 367 464 IPR011990 GO:0005515
Dere03g0354 1328 Gene3D Ribonuclease Inhibitor 811 1319 IPR032675 -
Dere03g0354 1328 PANTHER PROTEIN TONSOKU 1 1328 IPR044227 GO:0005634|GO:0006325|GO:0009933|GO:0040029|GO:0072423
Dere03g0354 1328 FunFam Protein TONSOKU 3 157 - -
Dere03g0354 1328 FunFam Protein TONSOKU 814 1192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0354 Dere-ChrDere03 7220625 7230197 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0354 03 7220625 7230197 Dere03g0354 03 7220625 7230197 ECH