Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0250 ATGGCCACTCAGTGGCTGTTGGTCTGGGTAATGGCGTCTCTACTCCATGGGAATGCAATGCCGATCACGTTTTCTGCAAGGCTGATTCATCGGTTCTCCGAAGAAATGAAGGCGCTCAATATTTCAAGGGGCGGGAGTCGTGGTATGTTTGGTGGCTGGCCGGAGAGGAGGAGTATGGACTACTACGAGATGCTTCTTCGCAGCGACTTTCTCAGGCAGAAGATGAAGCTTCGAGCTTCCTATCAGCTGCTTTTCCCCTCTCACGGCAGTAAAACGATGTCGCCTGGAAACGACTTTGGCTGGTTACATTACACATGGATTGATATAGGGACGCCAAGTACTTCATTTCTTGTGGCACTAGATGCCGGGAGTGATCTACTTTGGGTTCCATGTGATTGCATACAGTGTGCTCCTTTGTCTGCAAGTTACTATGCCAATCTGGATAAAGATCTGAACGAGTATAGTTCTTCTCGTTCTACATCCAGCAAGAACCTATCTTGCAGCCATCAATTATGTGAGATGGGTTCAAACTGTAAAAGTTCCAAGCAGCAATGTCCTTATACCATCAATTACATGTCAGAGAATACATCAAGTTCTGGGTTTTTAGTAGAGGATATATTGCATCTCGCATCAGGTGGTGATGGCAAATCCAACTCCACTGTTCAGGCTCCAGTCATTATAGGTTGTGGTATGAAGCAAAGCGGTGGTTATTTGGATGGAGTTGCTCCAGATGGTCTTATGGGTTTGGGAACTGGGGAAATTTCAGTTCCAAGTTTGCTTGCTAAATCAGGATTAATTCATAATTCTTTCTCAATGTGCTTTGATGAAGATGATTCTGGTAGAATATTCTTCGGGGACCAGGGATTAGCCATCCAACAGTCTACTGCATTCTTGCCATTGGATGGAATATATTCAACATATATTATTGGAGTGGAAGCATGTTGTGTCAGGGAAGCATGCCTTAAGATGACAAGCTTCAAATCACAGGTTGATAGTGGAACGTCATTTACATTTCTTCCAGGCCATGTGTATGAAGCAATTGCTGAGGAGTTTGACCAACAAGTAAATGCTTCAAGATCTAGCTTCAAAGGATCCCCTTGGGAGTATTGTTATGCATCCAGTTCGCCAGAGTTGTCCAAGGTTCCCTCCCTGACACTCTTGTTCCAACAGAACAGCAGCTTTGTGGTCCATAATCCTGTGTTTGTGTTTTATGACAATCAGGGAGTTATTGGATTTTGTTTAGCCATACAGCCAACTGAAGGAAATATGGGAACAATTGGACAGAACTTCATGACAGGCTACCGGCTGGTATTTGACAGGGAAAACATGAAGCTATCCTGGTCACGGTCAAATTGTCAGGATCTGAGTGTTGGTAAGAGTATGCCCCTTTCCCCTCCAAATAAGACACCCGCAAACCCCTTGCCTACAGATGAGCAGCAGAGAACCAATGGGCATGCAGTTGCTCCGGCTGTTGCTGGAAGAGCTCCCCACAAACCGTCGGCTGCTTCGTCTCAAATGATGTTATGCCGACAACATTGGCACTTTTGTTTGTTTCTTCTGCTTCAACTTGTCACAGCCCTTTAA 1584 0.4508 MATQWLLVWVMASLLHGNAMPITFSARLIHRFSEEMKALNISRGGSRGMFGGWPERRSMDYYEMLLRSDFLRQKMKLRASYQLLFPSHGSKTMSPGNDFGWLHYTWIDIGTPSTSFLVALDAGSDLLWVPCDCIQCAPLSASYYANLDKDLNEYSSSRSTSSKNLSCSHQLCEMGSNCKSSKQQCPYTINYMSENTSSSGFLVEDILHLASGGDGKSNSTVQAPVIIGCGMKQSGGYLDGVAPDGLMGLGTGEISVPSLLAKSGLIHNSFSMCFDEDDSGRIFFGDQGLAIQQSTAFLPLDGIYSTYIIGVEACCVREACLKMTSFKSQVDSGTSFTFLPGHVYEAIAEEFDQQVNASRSSFKGSPWEYCYASSSPELSKVPSLTLLFQQNSSFVVHNPVFVFYDNQGVIGFCLAIQPTEGNMGTIGQNFMTGYRLVFDRENMKLSWSRSNCQDLSVGKSMPLSPPNKTPANPLPTDEQQRTNGHAVAPAVAGRAPHKPSAASSQMMLCRQHWHFCLFLLLQLVTAL 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0250 527 FunFam Aspartyl protease family protein 1 289 454 - -
Dere03g0250 527 PANTHER ASPARTYL PROTEASES 69 446 IPR001461 GO:0004190|GO:0006508
Dere03g0250 527 ProSiteProfiles Peptidase family A1 domain profile. 103 448 IPR033121 -
Dere03g0250 527 MobiDBLite consensus disorder prediction 456 484 - -
Dere03g0250 527 Pfam Xylanase inhibitor C-terminal 326 448 IPR032799 -
Dere03g0250 527 Gene3D Acid Proteases 91 286 IPR021109 -
Dere03g0250 527 SUPERFAMILY Acid proteases 98 453 IPR021109 -
Dere03g0250 527 Gene3D Acid Proteases 290 454 IPR021109 -
Dere03g0250 527 PRINTS Pepsin (A1) aspartic protease family signature 328 339 IPR001461 GO:0004190|GO:0006508
Dere03g0250 527 PRINTS Pepsin (A1) aspartic protease family signature 109 129 IPR001461 GO:0004190|GO:0006508
Dere03g0250 527 PRINTS Pepsin (A1) aspartic protease family signature 424 439 IPR001461 GO:0004190|GO:0006508
Dere03g0250 527 FunFam Aspartyl protease family protein 1 89 286 - -
Dere03g0250 527 Pfam Xylanase inhibitor N-terminal 104 286 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0250 Dere-ChrDere03 6146386 6151149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0250 96 455 Miscellaneous Gene Families AT1G44130 26.649 1.11e-24 104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0250 03 6146386 6151149 Dere03g0250 03 6146386 6151149 ECH