Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0190 ATGGGCGGCCGAGGCAAGGCTCGCACTCAACGAAAGCATTTCCGGCAGAGCAGAGAGAATGTGTGGAAACGTCAAAAACCTGATCCTTCCACTCAAAACCCTGACTCCGCTGAGAATCCAAATCCTACTTGGACTCCCTTCGCCACCCAGAACTCTGCTTTTGATGAGTATTACAAAGAACAGTGCATAGTGCCCTCAGAAGAGTGGGATGCATTCGTCGGAGTTCTCAGAACTCCGTTGCCTGCAAGCTTCAGAATCAACGCTTGTAGCCAGTTTTCTGCAGATCTTAGGTCACAATTGGAGAATGATTTTGTGCAAACACTTCAGGCTGAGGTTGTTGAAGGGGCTGAGGCTGAGGCCATTAGACCTTTGCCATGGTATCCTGAGAATCTTGCTTGGCATTCAAACTTCTCCCGTATGCAGTTGAGGAAAAACCAAACACTTGAGAGGTTTCATGAATTTTTAAAGCTAGAAAATGAAATTGGAAATATTACAAGACAGGAAGCTGTCAGCATGGTGCCTCCCCTTTTCTTGAATGTACAGCCAAATCATTTTGTACTTGATATGTGTGCAGCACCAGGTTCGAAAACATTCCAATTGCTTGAGATTATACATCAGTCAACTAAAGCAGGATCACTACCTGATGGAATGGTTATAGCAAATGATCTTGATGTCCAAAGATGTAATCTTCTCATCCACCAAACAAAACGGATGTGCACAGCCAACCTAATTGTCACTAATCATGAAGCACAGAACTTCCCAGGTTGTCGTTTAATCAGAAATCATGAAACATTGGAACCAGAACAGCATATTGGCCAACTTTTATTTGATTGCGTTCTGTGTGATGTGCCCTGCAGTGGAGATGGAACCCTTCGCAAGGCACCTGATCTCTGGAGGAAATGGAACATTGGGATGGGCAATGGACTTCATAGCCTACAAATTCTAATAGCTATGCGAGGTTTATCTTTACTTAAAGTTGGAGGAAGAATGGTATACTCAACCTGCTCAATGAATCCAATAGAGAATGAAGCTGTGGTTGCAGAGATTTTGCAGAGGTGTGGAGGATCTGTTGAACTTGTTGATGTCTCTAATGAGCATCCCCAACTTATTCGCCGGCCAGGTCTCAAGAGATGGAAGGTACGTGACAGGGGAATGTGGTTTGCCTCCTACAAAGATGTGCCAAAGTTTCGCAGAAGTTCAGTTCTTCCTAGCATGTTTCCTTCTGGCAAAAGCTGTCAGGATCATGTAGAGAGTGATGATAAGGTGGACATGAGAGATGATATTGATGAGGGTTCTAATGGAAACTTTGAAAATGGCACTCAATCAGTGGAGAATCCTGTGGGGCGTGAGTTTACTGAGGAAGTTTCTGATTTACCGCTAGAGCATTGCATGAGGATAGTACCTCATGATCAAAATACTGGAGCCTTCTTTATTGCTGTACTGCAAAAGGTTTCTCCTCTTCCAGCAATTATAATTCAGGAAAAACCTAAAAATGGAATTGATAAACAGCATGTAGAACCAGAAAACCAGGTTATTGAGGATTCGAAAGTATTGCAGGTTGATTCGTTAGAAAGTACGTGTGTGGAAGCTTTGGAAGAGATTAATGTAATTGATAATAAACCCAATACTGAAGATTTGGAAGTTAGTCCTTCTGTTACATATATAGAAAAGGATTTGGAGGAAGCCCAAGAGCCTCTTAAAACAGAGAGCATAGTGAAGATGACTCAGGGAAAAAGAAAGTTGCAGATTCAAGGCAGGTGGAGAGGTGTTGATCCTGTTTTCTTCTTCAAAGATGAATTCATTATCAACAGCATAAAGGAATTTTATGGTATCGATGAAAGGTTTCCATTTAATGGTCACCTTGTCACTAGAAACAATGAAACAGGCAGTGTTAAAAGAATCTACTATGTCTCCAAGTCAGTCAAAGATGTTCTTGAATTGAATTTCTCAGTTGGGCAGCAACTCAAAATAGCATCCATTGGCCTGAAGATGTTTGAAAGACAGAAACCAATGGAAGGAAGCTCAGCACCATGTGCTTTCCGAATATCATCTGAAGGATTGCCCCTTATTTTGCCATACATCACCAAGCAGATTCTGCGTGCTTCTCCTGTAGACTTCAAGCATCTTCTGCAGTACAAAGCTGTAAAATTTGCAGATTTTGTTGATGCCGAGTTTGGTGAAAAGGCAGCAAACCTAATGCCAGGCTATTGTGTGGTAATCTTGGGTAAAGAAAACAACAGAGCAGCGTCAGAGTCCATTCAAGTGGACGAGTCAACTATAGCCATTGGATGCTGGAAAGGGAGGGCCAGTTTGACAGTGATGGTAACCGCAATAGACTGCCGAGAACTGCTTGAAAGACTTTTAGTGCGTCTAGACACAGAAGAGGAGGCCTCTGTGCACGAGGACAAACCTTCTAATAATGCAGGCGATGAAGTACAGGGCACGAACGGCATAGATGATTCGGAAGCTATTGGGGGCGAAAATAGCTAG 2490 0.4281 MGGRGKARTQRKHFRQSRENVWKRQKPDPSTQNPDSAENPNPTWTPFATQNSAFDEYYKEQCIVPSEEWDAFVGVLRTPLPASFRINACSQFSADLRSQLENDFVQTLQAEVVEGAEAEAIRPLPWYPENLAWHSNFSRMQLRKNQTLERFHEFLKLENEIGNITRQEAVSMVPPLFLNVQPNHFVLDMCAAPGSKTFQLLEIIHQSTKAGSLPDGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQNFPGCRLIRNHETLEPEQHIGQLLFDCVLCDVPCSGDGTLRKAPDLWRKWNIGMGNGLHSLQILIAMRGLSLLKVGGRMVYSTCSMNPIENEAVVAEILQRCGGSVELVDVSNEHPQLIRRPGLKRWKVRDRGMWFASYKDVPKFRRSSVLPSMFPSGKSCQDHVESDDKVDMRDDIDEGSNGNFENGTQSVENPVGREFTEEVSDLPLEHCMRIVPHDQNTGAFFIAVLQKVSPLPAIIIQEKPKNGIDKQHVEPENQVIEDSKVLQVDSLESTCVEALEEINVIDNKPNTEDLEVSPSVTYIEKDLEEAQEPLKTESIVKMTQGKRKLQIQGRWRGVDPVFFFKDEFIINSIKEFYGIDERFPFNGHLVTRNNETGSVKRIYYVSKSVKDVLELNFSVGQQLKIASIGLKMFERQKPMEGSSAPCAFRISSEGLPLILPYITKQILRASPVDFKHLLQYKAVKFADFVDAEFGEKAANLMPGYCVVILGKENNRAASESIQVDESTIAIGCWKGRASLTVMVTAIDCRELLERLLVRLDTEEEASVHEDKPSNNAGDEVQGTNGIDDSEAIGGENS 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0190 829 Gene3D Vaccinia Virus protein VP39 47 395 IPR029063 -
Dere03g0190 829 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 10 798 IPR023267 GO:0001510
Dere03g0190 829 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 655 667 IPR023270 GO:0016428
Dere03g0190 829 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 133 154 IPR023270 GO:0016428
Dere03g0190 829 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 361 380 IPR023270 GO:0016428
Dere03g0190 829 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 72 484 IPR001678 GO:0008168
Dere03g0190 829 MobiDBLite consensus disorder prediction 26 48 - -
Dere03g0190 829 Pfam 16S rRNA methyltransferase RsmB/F 177 364 IPR001678 GO:0008168
Dere03g0190 829 MobiDBLite consensus disorder prediction 1 48 - -
Dere03g0190 829 MobiDBLite consensus disorder prediction 795 829 - -
Dere03g0190 829 PRINTS RNA (C5-cytosine) methyltransferase signature 187 197 IPR023267 GO:0001510
Dere03g0190 829 PRINTS RNA (C5-cytosine) methyltransferase signature 277 289 IPR023267 GO:0001510
Dere03g0190 829 PRINTS RNA (C5-cytosine) methyltransferase signature 466 483 IPR023267 GO:0001510
Dere03g0190 829 PRINTS RNA (C5-cytosine) methyltransferase signature 327 343 IPR023267 GO:0001510
Dere03g0190 829 FunFam S-adenosyl-L-methionine-dependent methyltransferase superfamily protein 49 391 - -
Dere03g0190 829 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 51 484 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0190 Dere-ChrDere03 5546475 5553960 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0190 03 5546475 5553960 Dere03g0190 03 5546475 5553960 CCT
Dere03g0190 03 5546475 5553960 Dere03g0190 03 5546475 5553960 ECH