Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0156 ATGAGAGTGAATGTTAAGTATTTAACAGTCTCCATTCCACTGTCTGGCGGAACAGCCGCACCAGCAACCATGGAGCGTGTCTCCGTAATCTCTATCTGCTTTCTTCTTGTTCTGTGTATTCAGAGTGTGACATCAAAAAATATATCTGAGAATGAGAGAGGCGTGCAACGAGCAGGCTTCCCACCAAGAGGTTGGAATTCCTATGATTCCTTTGGCTGGACAATTTCCGAAGAAGAATTCTTACAAAATGCTAAAGTCATATCCCAGAGTCTCCATGTTCATGGATATGAGTATGTTGTGGTGGATTATCTCTGGTATAGAAAGAAAGTCAAGGGTGCTTATCCTGATTCTCTTGGATTCGATGTGATTGATGAATGGGGAAGGATGATCCCTGACCCTCAAAGGTGGCCTTCTTCCAAAGGTGGGAAGGGGTTCAAGGAAGTGGCTGATCAAGTACATAGCATGGGTTTAAAGTTTGGGATTCATGTTATGAGAGGGATAAGTACTCAAGCAGTGAATGCAAACACCCCTATCCTAGACACAAGGAAGGGAGGCGCATATCAGGAATCTGGCAAAGTGTGGCATGCAAAAGACATAGCAATCCCAGAAAGGGCTTGTGCATGGATGCCTCACGGTTTCATGAGTGTAAATACCAAGTTGGGGGCCGGGAGAGCCTTTCTGAGGTCCCTCTATGAGCAGTATGCCTCATGGGGTGTTGATTTTGTGAAACATGACTGTGTGTTTGGCGACGACTTGGACTTGAATGAAATAAGATATGTATCAGAGATTCTCAGGGCACTTGATCGCTCCATTGTATATTCTCTGTCTCCTGGAACCAGTGTGGCACCAGCCATGGCTAAGGATGTCAGTGGACTAGTCAACATGTACCGCATAACAGGAGATGACTGGGATACATGGGGAGATGTCACAGCTCATTTTGATGTGACAAGGGATTTTGCTACTGCTAATATGATAGGAGGAAAAAGTTTAATGGGAAATTCCTGGCCTGATTTGGACATGCTTCCATTGGGATGGCTAACTGATCCAGGTTCAAATGAAGGTCCACACAGGTATTCTCGCCTTAATCTAGAAGAGCAAAAAACGCAGATGACTTTGTGGTCTATGGCAAAGTCTCCTCTTATGTATGGAGGGGATGTACGGAAGCTTGATCAAACCACATACAGTCTCATCACTAATCCTACTCTGCTGGAGATTAATTCTTTGAGCTCGAACAATATGGAGTTTCCATATATCACTAGCTCCAAGAATATGAAGATTCAAGACCAGGATCAAGCTGGGCAAAGGAGAGGAAAGAGAGAACCGCAAACATCATATACACGTTCTTTTGGTCTCATTGGCTGTACCGAGTCAAAGGCAGTTGGTTGGTCGATTGAAAGTCTTAACCAAGATGTTGAAAGAATCTGCTGGAAAAGGAGCTTCAGAAACAAGCAGCGGGAACCTTTCTGTGTGCATAAGAGAGAAATTCATGTAGCACTAGAAGAGGATATTTATCAAGAAGACTCTAGAAGGAAACATCATTTAGTTTCAGCAAACGGAATGAAACTTTGCCTGGATGCTTCTCCAAATGTAAAACTTACTTCTAAAGAATCCAAGAGAGGTAGATTTTCTCCTTGCAGAAGGGATGCAAATCAGATGTGGGAATTAAACCCTAATGGGACCCTGGTAAATAGTTATTCCAGGCTGTGTGCAACATTAGATTCTGCCAAAGCTGAAACTAATTCTCATGGGGTTCGCTCTTGGATTGCAAAAGGAAGAAAAGGAGAAGTCTATGTTGCTTTCTTCAATCTAAATGCACATAATACGGTGATATCTACGGAGACATCAGACCTGGCTAGGGTGCTTCCTGGAAGAGACTACAATTCCTGTACGTGCAGGGAAGTGTGGAGTGGAAAGGACATAAAAATAAGACGAGGGACGTTATCAGCAGCAGTGGAAGAGCATGGGTGTGCACTTTTTGTCCTCAATTGCAACTAG 1995 0.4366 MRVNVKYLTVSIPLSGGTAAPATMERVSVISICFLLVLCIQSVTSKNISENERGVQRAGFPPRGWNSYDSFGWTISEEEFLQNAKVISQSLHVHGYEYVVVDYLWYRKKVKGAYPDSLGFDVIDEWGRMIPDPQRWPSSKGGKGFKEVADQVHSMGLKFGIHVMRGISTQAVNANTPILDTRKGGAYQESGKVWHAKDIAIPERACAWMPHGFMSVNTKLGAGRAFLRSLYEQYASWGVDFVKHDCVFGDDLDLNEIRYVSEILRALDRSIVYSLSPGTSVAPAMAKDVSGLVNMYRITGDDWDTWGDVTAHFDVTRDFATANMIGGKSLMGNSWPDLDMLPLGWLTDPGSNEGPHRYSRLNLEEQKTQMTLWSMAKSPLMYGGDVRKLDQTTYSLITNPTLLEINSLSSNNMEFPYITSSKNMKIQDQDQAGQRRGKREPQTSYTRSFGLIGCTESKAVGWSIESLNQDVERICWKRSFRNKQREPFCVHKREIHVALEEDIYQEDSRRKHHLVSANGMKLCLDASPNVKLTSKESKRGRFSPCRRDANQMWELNPNGTLVNSYSRLCATLDSAKAETNSHGVRSWIAKGRKGEVYVAFFNLNAHNTVISTETSDLARVLPGRDYNSCTCREVWSGKDIKIRRGTLSAAVEEHGCALFVLNCN 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0156 664 SUPERFAMILY Glycosyl hydrolase domain 580 662 - -
Dere03g0156 664 SUPERFAMILY (Trans)glycosidases 59 406 IPR017853 -
Dere03g0156 664 SUPERFAMILY Ricin B-like lectins 514 587 IPR035992 -
Dere03g0156 664 Gene3D - 576 663 IPR013780 -
Dere03g0156 664 Pfam Alpha galactosidase A 232 406 IPR002241 GO:0004553|GO:0005975
Dere03g0156 664 Pfam Alpha galactosidase A 74 169 IPR002241 GO:0004553|GO:0005975
Dere03g0156 664 MobiDBLite consensus disorder prediction 422 444 - -
Dere03g0156 664 PRINTS Glycosyl hydrolase family 27 signature 364 385 IPR002241 GO:0004553|GO:0005975
Dere03g0156 664 PRINTS Glycosyl hydrolase family 27 signature 149 170 IPR002241 GO:0004553|GO:0005975
Dere03g0156 664 PRINTS Glycosyl hydrolase family 27 signature 55 74 IPR002241 GO:0004553|GO:0005975
Dere03g0156 664 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 30 663 IPR002241 GO:0004553|GO:0005975
Dere03g0156 664 Gene3D Aldolase class I 53 409 IPR013785 -
Dere03g0156 664 CDD GH27 61 406 IPR002241 GO:0004553|GO:0005975
Dere03g0156 664 Pfam Alpha galactosidase C-terminal beta sandwich domain 582 661 IPR041233 -
Dere03g0156 664 CDD RICIN 511 587 IPR000772 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0156 Dere-ChrDere03 5000889 5006677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0156 28 498 Glycoside Hydrolase AT3G26380 64.968 0.0 641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0156 03 5000889 5006677 Dere03g0156 03 5000889 5006677 CCT
Dere03g0156 03 5000889 5006677 Dere03g0156 03 5000889 5006677 ECH