Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0141 ATGGACCCCGCTGCCTCTCGTCCAGCTGTAGTCATCGATAATGGCACCGGGTATACTAAGATGGGGTTCGCTGGTAACGTTGAGCCCTGCTTTATAACTCCGACAGTAGTTGCCGTTAACGAGTCATTCCTAAATCAATCAAGAAGCTCTTCCAAGGCCAATTGGCTCGCGCAGCACAATGCGGGAGTTATGGCTGATCTCGATTTCTTCATTGGGGACGAGGCAATTTCCAAGTCTCGATCTAGTAACACTTACAATCTTAGTTACCCTATTCAGCATGGCCAAGTTGACAATTGGGACGCCATGGAGCGATTCTGGCAGCAGTGCATATTTAATTATTTGAGGTGCGATCCGGAGGATCATTATTTTCTGTTGACCGAGAGTCCGCTGACAGCACCTGAAAGCCGCGAGTATACTGGTGAAATCATGTTTGAGACATTTAATGTACCTGGACTTTACATAGCGGTAAATTCCGTGCTTGCTCTTGCCGCTGGCTACACAACATCCAAGTGTGAGATGACAGGAGTTGTAGTTGATGTTGGAGATGGAGCTACTCATGTTGTACCTGTAGCAGATGGTTATGTAATTGGAAGTAGCATTAAATCTGTTCCTATTGCTGGGAAAGATGTTACTCTTTTTGTCCAGCAGCTCATGCGGGAAAGAGGAGAGAATGTACCACCTGAAGACTCTTTTGAAGTGGCGCGGAAAGTGAAGGAAATGTATTGCTATACCTGTTCTGACATTGTTAAGGAGTTTAATAAGCATGACAAAGAACCAGCCAAGTATATCAAGCAATGGAGAGGTATTAAACCAAAAACAGGAGCACCATACTCCTGTGATATTGGCTATGAACGATTCCTTGGTCCTGAGATCTTCTTTAATCCTGAGATATATAGCAGTGATTTTACCACCCCTTTGCCAGTTGTAATTGACAAGTGCATTCAGTCTGCGCCAATTGATACAAGAAGAGCATTATATAAGAATGTAGTTTTGTCTGGTGGATCAACTATGTTCAAGGATTTCCACAGGAGGTTGCAACGTGATTTGAAGAAAATTGTGGATGCTCGTGTTCTTGCATCTGAAGCACGTCTTGGTGGGGAGATAAAAGCACAACCAGTGGAGGTCAATGTTCTAAGCAATCCCATCCAGAGATTTGCAGTTTGGTTTGGAGGCTCAGTGCTGGCGTCAACACCTGAGTTTTTTGAGGCTTGCCACACAAAGGCAGAGTATGAGGAATATGGTGCAAGCATATGCAGGACAAATCCCGTTTTCAAAGGGATGTATTGA 1287 0.4437 MDPAASRPAVVIDNGTGYTKMGFAGNVEPCFITPTVVAVNESFLNQSRSSSKANWLAQHNAGVMADLDFFIGDEAISKSRSSNTYNLSYPIQHGQVDNWDAMERFWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVGDGATHVVPVADGYVIGSSIKSVPIAGKDVTLFVQQLMRERGENVPPEDSFEVARKVKEMYCYTCSDIVKEFNKHDKEPAKYIKQWRGIKPKTGAPYSCDIGYERFLGPEIFFNPEIYSSDFTTPLPVVIDKCIQSAPIDTRRALYKNVVLSGGSTMFKDFHRRLQRDLKKIVDARVLASEARLGGEIKAQPVEVNVLSNPIQRFAVWFGGSVLASTPEFFEACHTKAEYEEYGASICRTNPVFKGMY 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0141 428 Pfam Actin 7 419 IPR004000 -
Dere03g0141 428 FunFam Actin-related protein 3 10 174 - -
Dere03g0141 428 Gene3D - 158 386 - -
Dere03g0141 428 FunFam Actin-related protein 3 (ARP3) 205 303 - -
Dere03g0141 428 Gene3D - 10 414 - -
Dere03g0141 428 FunFam Actin-related protein 3 387 414 - -
Dere03g0141 428 Gene3D Actin; Chain A, domain 4 205 303 - -
Dere03g0141 428 SUPERFAMILY Actin-like ATPase domain 7 177 IPR043129 -
Dere03g0141 428 CDD NBD_sugar-kinase_HSP70_actin 10 206 - -
Dere03g0141 428 PANTHER ACTIN 9 415 IPR004000 -
Dere03g0141 428 SMART actin_3 7 423 IPR004000 -
Dere03g0141 428 SUPERFAMILY Actin-like ATPase domain 173 423 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0141 Dere-ChrDere03 4868219 4874318 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0141 9 419 Miscellaneous Gene Families AT2G42100 34.217 5.21e-74 234
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0141 03 4868219 4874318 Dere03g0141 03 4868219 4874318 ECH