Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g3318 ATGCTCAGATTGCTGCCGACGCTATCGTTCCTCTTCTTGAGAATAAAAAATCCTCATTATCTTCGAAAAAGTCATCGTTTGATATCTTCGGGTAGAACAATTAGAAGAGAAGCTACAGGAGTCAGGTTTAAAGTGACTACCTCTTATCCTATTCAATCCATGGCCGCCTCAGCAAGTTCAATGTCAAAAGCTGCGCAAGTGGCTGCAGAGGATGAAGTGCAACAGGTTAAACTACTAACATCAGCCAACGATGAACATGGTGGTGTTCTTGTGGAAATGGATGAGCCTATGGACTCTACAACCTTTATCTCAATTCTCAGAGCTTCAATCACTCACTGGAAACAGCTGGGCAAGAAGGGCGTTTGGATAAAATTACCTATTCATCTAGTCAATCTTGTTGAACCTCTGGTTAAGGAAGGCTTCTGGTACCACCATGCAGAACCAAAACATTTAATGCTGGTATATTGGATTCCTGAAAGTGCAAATACTATTCCAGCCAATGCCACACACCGAGTTGGTGTTGGTGCATTTGTGATGAATGAAAAACGAGAGGTCCTAGTGGTTCAAGAAAAAAGTGGATTTTTTCGTGGAACTGGAGTCTGGAAATTCCCTACTGGAGTTGTTGATCAGGGAGAAGATATTTGTGTAGCAGCAGTAAGAGAGGTTAAAGAAGAAACAGGAATTGACTCAGAATTTGTGGAAGTATTAGCATTCAGACAAAGTCACAAGTCATTCTTTGACAAGTCAGATCTGTTCTTCGTATGCATGTTGCGCCCGCTTTCTTTGGACATCCAAATGCAAGAATTGGAGTTAGAGGCTGCACAGTGGATGCCGTTTGAGGAATATGCAGCTCAGCCAATTGTCCAAAAGCATCAACTTATAAAGTATATAAATGATGTTTGCTGGGAAAAGATCAACGGACAATATCATGGATTTCAACCTGTACCTACATCATCAAACTTTTCTGAGAAGAAGAGTCATTTGTACTTGAATGCTGGGGGCCTGAAGAGGTTTAATTCTTTGTAA 1026 0.4123 MLRLLPTLSFLFLRIKNPHYLRKSHRLISSGRTIRREATGVRFKVTTSYPIQSMAASASSMSKAAQVAAEDEVQQVKLLTSANDEHGGVLVEMDEPMDSTTFISILRASITHWKQLGKKGVWIKLPIHLVNLVEPLVKEGFWYHHAEPKHLMLVYWIPESANTIPANATHRVGVGAFVMNEKREVLVVQEKSGFFRGTGVWKFPTGVVDQGEDICVAAVREVKEETGIDSEFVEVLAFRQSHKSFFDKSDLFFVCMLRPLSLDIQMQELELEAAQWMPFEEYAAQPIVQKHQLIKYINDVCWEKINGQYHGFQPVPTSSNFSEKKSHLYLNAGGLKRFNSL 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g3318 341 CDD Nudix_Hydrolase_12 170 301 - -
Dere02g3318 341 Gene3D - 75 161 - -
Dere02g3318 341 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 171 309 - -
Dere02g3318 341 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 129 147 IPR003293 -
Dere02g3318 341 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 167 185 IPR003293 -
Dere02g3318 341 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 151 167 IPR003293 -
Dere02g3318 341 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 255 279 IPR003293 -
Dere02g3318 341 ProSitePatterns Nudix box signature. 206 227 IPR020084 GO:0016787
Dere02g3318 341 Pfam NUDIX domain 170 289 IPR000086 -
Dere02g3318 341 Pfam Nudix hydrolase domain 79 157 IPR040618 -
Dere02g3318 341 PANTHER NUDIX HYDROLASE RELATED 52 332 IPR003293 -
Dere02g3318 341 FunFam nudix hydrolase 2 76 162 - -
Dere02g3318 341 FunFam Nudix hydrolase 8 171 309 - -
Dere02g3318 341 SUPERFAMILY Nudix 137 298 IPR015797 -
Dere02g3318 341 ProSiteProfiles Nudix hydrolase domain profile. 169 301 IPR000086 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g3318 Dere-ChrDere02 41671256 41677612 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g3318 02 41671256 41677612 Dere02g3318 02 41671256 41677612 ECH