Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g3296 ATGGTGCGGTGCATAGACGGAGTAAAGCATTTGTGTGCTGCTCTGATAAGTTGTTGTGATGGCGATTTGTCTAAGCAACCTACTGGTTTAGAAAATCCAGAAGCTCTTGCAAGGGAGACAGTGTTTAGTGTTAGTGAGATTGAAGCTCTGTACGAACTGTTCAAGAAGATCAGCAGTGCAGTGATTGATGATGGCCTAATTAACAAGGAAGAATTTCAGTTGGCATTATTCAAGACAAGCAAGAAAGAGAGCTTATTTGCAGATAGGGTATTTGACTTGTTTGACAGAAAGCATAATGGAATACTTGATTTCGAAGAGTTTGCTCGTGCTCTTTCTGTCTTTCATCCCAGTGCATCAGTTGATGATAAGATTGAGTTTTCATTCCAGTTGTACGATCTTAAACAGCAAGGCTTTATTGAAAGACAGGAGGTAAAACAAATGGTGGTGGCCACTCTTGCCGAATCTGGAATGAATCTTTCAGATGACGTGGTTGAAAGTATCATTGACAAGACATTTGAGGAAGCTGATACGAAACATGACGGGAAGATTGACAAGGAAGAATGGCGAAACCTTGTCTTGCGGCATCCATCCCTTTTGAAGAATATGACTCTTCAATATCTTAAAGACATCACCACCACATTTCCCAGTTTTGTGTTTCACTCACAGGTTGATGATACTTGA 681 0.4053 MVRCIDGVKHLCAALISCCDGDLSKQPTGLENPEALARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTSKKESLFADRVFDLFDRKHNGILDFEEFARALSVFHPSASVDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLSDDVVESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTLQYLKDITTTFPSFVFHSQVDDT 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g3296 226 SMART efh_1 123 151 IPR002048 GO:0005509
Dere02g3296 226 SMART efh_1 86 114 IPR002048 GO:0005509
Dere02g3296 226 SMART efh_1 167 195 IPR002048 GO:0005509
Dere02g3296 226 Pfam EF-hand domain pair 64 109 IPR002048 GO:0005509
Dere02g3296 226 ProSiteProfiles EF-hand calcium-binding domain profile. 163 198 IPR002048 GO:0005509
Dere02g3296 226 Gene3D - 32 226 - -
Dere02g3296 226 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Dere02g3296 226 Pfam EF-hand domain pair 122 190 IPR002048 GO:0005509
Dere02g3296 226 FunFam calcineurin B-like protein 3 32 225 - -
Dere02g3296 226 SUPERFAMILY EF-hand 33 218 IPR011992 -
Dere02g3296 226 PANTHER CALCINEURIN B 18 225 IPR045198 GO:0005509|GO:0019722|GO:0019900
Dere02g3296 226 PRINTS Recoverin family signature 183 203 - -
Dere02g3296 226 PRINTS Recoverin family signature 90 111 - -
Dere02g3296 226 PRINTS Recoverin family signature 137 155 - -
Dere02g3296 226 ProSiteProfiles EF-hand calcium-binding domain profile. 119 154 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g3296 Dere-ChrDere02 41351022 41354998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g3296 1 226 EF-hand Containing Proteins AT5G55990 86.283 9.44e-145 401
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g3296 02 41351022 41354998 Dere02g3296 02 41351022 41354998 ECH