Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0899 ATGGTGGGTTTCGTCTCGTTGGTAACAGGGAGGCATGGCCCAAGTGGGTTTGGTTCAGCTTCAACTGCAGAGCAGGTTACTGAAGGAATTGATGCCTCCAATCTCACTGCCATCGTCACAGGAGGATCAAGTGGAATTGGCTTAGAGACAGCAAGAGTCTTAGCTCTTCGGAAGGTCCATGTGATCATTGCTGCGAGGAACATGGAAGCATCCAAGGAAGCTAAGAAATTTATTCTGCAACAAAATCAGTCTGCTCGAGTGGATATAATGAAGCTCGACCTTTGCTCTGTCAAGTCTATCAGAGCATTTGTTGACAACTTCATCGCCCTCGATCTTCCTCTCAACATCTTAATAAACAATGCTGGAGTTATGTTCTGCCCTTTCCACCTCTCAGAGGATGGGATTGAGATGCAGTTTGCAACAAATCATATTGGTCACTTCCTCTTGACCAACCTTCTTCTTGACAGAATGAAACAAACTGCAAAGACCAGTGGAATTGAGGGAAGGATCGTGAATCTGTCATCAATTGCCCATACCTATACTTACCGAAAGGGGATTCGATTTGATAAGATCAATGATCAACTTGGTTACTCTGACAAGAGAGCATATGGGCAGTCCAAGTTGGCTAACATTCTTCACGCAAATGAGCTGTCTCGCCGCCTGCGGGAAGAGGGTGTTAACATTACAGCCAACTCAGTCCACCCAGGAGTGATAATGACTCCTCTCATGAGACATTCCTCCTTCATTATGCATTGTCTGAAAGTGTTCACCTTTTTCATATGGAAGAACGTCCCACAGGGAGCAGCCACAACATGCTATGTTGCTCTCCACCCACGTGTGAAAGGCGAAAGTGGGAAGTACTTTCAGGATTGCAATGAGCATAAACCAAGTTCATTCGCCACAAACCAACTGCTAGCAAGGAAACTCTGGGATTTCAGCAACAAGTTGATCAATTCACTTTCTAAAGCTTGA 972 0.4516 MVGFVSLVTGRHGPSGFGSASTAEQVTEGIDASNLTAIVTGGSSGIGLETARVLALRKVHVIIAARNMEASKEAKKFILQQNQSARVDIMKLDLCSVKSIRAFVDNFIALDLPLNILINNAGVMFCPFHLSEDGIEMQFATNHIGHFLLTNLLLDRMKQTAKTSGIEGRIVNLSSIAHTYTYRKGIRFDKINDQLGYSDKRAYGQSKLANILHANELSRRLREEGVNITANSVHPGVIMTPLMRHSSFIMHCLKVFTFFIWKNVPQGAATTCYVALHPRVKGESGKYFQDCNEHKPSSFATNQLLARKLWDFSNKLINSLSKA 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0899 323 PANTHER RETINOL DEHYDROGENASE 14 317 - -
Dere02g0899 323 CDD retinol-DH_like_SDR_c_like 36 310 - -
Dere02g0899 323 Gene3D - 25 320 - -
Dere02g0899 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Dere02g0899 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Dere02g0899 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Dere02g0899 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Dere02g0899 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Dere02g0899 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Dere02g0899 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Dere02g0899 323 Pfam short chain dehydrogenase 36 182 IPR002347 -
Dere02g0899 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 296 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0899 Dere-ChrDere02 8609256 8611192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0899 35 249 Miscellaneous Gene Families AT2G29150 30.702 1.57e-07 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3005 01 44574127 44576287 Dere02g0899 02 8609256 8611192 CCT
Dere02g0899 02 8609256 8611192 Dere02g0899 02 8609256 8611192 ECH