Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0464 ATGATTTGTAGCCGTCTGATTTCCGGCAGAGGTTGGCTACTCAGGCGGATGTGTACGGCCGCGACGAAGCTAGCGGAAGCCTGGGCCGAGCATTCGGGGAATGAGGGGCGCCTTTATCGAAGATTATCGGCGCTGGAAATGACAGGAGGGACCGTGTCGCAGACGTTAAACCAGTATATTATAGAGGGCAAGGCCATCAGGAAAACCGAACTCCAACGATGCGTCAAGCAGCTTCGAAAGTATCGTAAATTCCAGCATGCACTTGAGATAATGGAATGGATGGAATTGAGGAGAATCAACTATTCCTACGCTGACTTTGCAGTACATTTAGATCTCGTATCCTTAACCAAGGGGGTGGTAGCAGCTGAGAATTATTTCAATGGTCTTCCTCCCCCTGCTATGAACAAATCAACATATGGAGCTCTTTTGAATTGCTATTGCAGGGACTTAATGGCTGACAAGGCATTGGAACTTTTTGAAAAGATGAAAGAACTCGATTATGTCACTAATCTGACCTTCAACAATCTCATGTCTCTGTATATGAGACTGGGCGAACCTGAGAAAGTGCCTCCGTTGATAGATGAGCTGAAGCAGAGGAAAATTCCGATGGCTGCTTTTACATATCATGTCTGGATGAATAGCTATGCCTCTTTAAATGATATTGAGGGAGTAGAGAGAGTTTATGAGGAGATGAGAAAAGAAGACGAAGACAAAATCAATTGGCAGACTTACAGCAACCTTGCTGCTATCTATGTAAAGGCTAAACATTTTGAGAAAGCTGAATCTGCGCTTAAGTTGGTAGAAAAGGTGGTGAAACCCCGTCAGCGTGATGCTTACCATTTCTTGCTTAGCCTTTATGCAGGGACTTCTAATCTAGGTGAAGTTTATAGGGTATGGAATTCCCTCAAGTCTGCCCCTCCAGTGACCAACATGAGCTATCTTACGATGCTTCAGACCCTTCGTAGACTTAATGATATTGAGGGTTTAACAAAATGCTTTAATGAGTGGGAATCTAATTGTACCAGTTATGATATAAGGTTGGTCAGTGTAATTATAAGTGCCTACTTGAGTCATGGCCTCTGTGAAGAAGCGGAATTGGTCTTTAAAGATGCCATCAGGAGGAGGCAGAGCAAAGGACCCTTTTATAACATCCATGAAATGTTCATACTCTTCTTCTTGGAGAAGCGTAAGGTAGACCTTGCTGTGCGTCACCTAGAGGCAGCTCTTTCAGAAGTCAAGGATGATGGATGGAGTCCTTCAGCAGAAGTTGTAAGTGGTTTTCTAAAGTATTATGAAGAAGAGAAAGCTGACGGAGTTGAGAAGCTTCGCAAGATTTTCAAGACTTACAATTTTGACGATAATTCCCTTCTTAGAAGTTACATAAATGCTGACAAATCGGCTCCTGGATTACATCAAATATTAAAGGATTAA 1431 0.4298 MICSRLISGRGWLLRRMCTAATKLAEAWAEHSGNEGRLYRRLSALEMTGGTVSQTLNQYIIEGKAIRKTELQRCVKQLRKYRKFQHALEIMEWMELRRINYSYADFAVHLDLVSLTKGVVAAENYFNGLPPPAMNKSTYGALLNCYCRDLMADKALELFEKMKELDYVTNLTFNNLMSLYMRLGEPEKVPPLIDELKQRKIPMAAFTYHVWMNSYASLNDIEGVERVYEEMRKEDEDKINWQTYSNLAAIYVKAKHFEKAESALKLVEKVVKPRQRDAYHFLLSLYAGTSNLGEVYRVWNSLKSAPPVTNMSYLTMLQTLRRLNDIEGLTKCFNEWESNCTSYDIRLVSVIISAYLSHGLCEEAELVFKDAIRRRQSKGPFYNIHEMFILFFLEKRKVDLAVRHLEAALSEVKDDGWSPSAEVVSGFLKYYEEEKADGVEKLRKIFKTYNFDDNSLLRSYINADKSAPGLHQILKD 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0464 476 PANTHER OS12G0527900 PROTEIN 28 467 - -
Dere02g0464 476 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 135 169 IPR002885 -
Dere02g0464 476 Gene3D Tetratricopeptide repeat domain 51 236 IPR011990 GO:0005515
Dere02g0464 476 FunFam Pentatricopeptide repeat-containing protein mitochondrial 68 277 - -
Dere02g0464 476 Pfam PPR repeat 206 234 IPR002885 -
Dere02g0464 476 Pfam PPR repeat 349 374 IPR002885 -
Dere02g0464 476 Pfam PPR repeat 172 199 IPR002885 -
Dere02g0464 476 Pfam PPR repeat 137 165 IPR002885 -
Dere02g0464 476 Gene3D Tetratricopeptide repeat domain 263 450 IPR011990 GO:0005515
Dere02g0464 476 NCBIfam pentatricopeptide repeat 138 168 IPR002885 -
Dere02g0464 476 NCBIfam pentatricopeptide repeat 206 235 IPR002885 -
Dere02g0464 476 SUPERFAMILY TPR-like 138 353 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0464 Dere-ChrDere02 4621650 4623467 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0464 38 434 EF-hand Containing Proteins AT1G02150 35.910 5.89e-79 253
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g0464 02 4621650 4623467 Dere01g2658 01 41443784 41444833 CCT
Dere02g0464 02 4621650 4623467 Dere02g0464 02 4621650 4623467 ECH