Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0019 ATGGTAGAAAATTTTACATTTAAGAGTCTATTACGAGCAATTGATATTGGTCCTTTTCTCCCCAGGGCTCGGTACGTTCTCCTGGTTTATTCACTACTTCGAATTGTAGCCGGAGTCCTCGTTTCGATCACATCGGACAAAACAGGTGAGAGGGGGGGGGGGGGATCAGAGATGTTGCAGTGCATATTTCTTTTGTCGGATTCCGGAGAGGTCATGCTAGAGAAACAACTAGCTGGGCACCGCGTAGATCGATCCATATGTGCGTGGTTTTGGGAACAGGCCGTTTCGCAAGGTGATTCCTTCAAGCATCAACCAGTAATTGCATCCCCGACACATTATCTTTTCCAAGTTTTTCGTGAGGGAATCACTTTTTTGGCGTGCACCCAAGTGGAAATGCCACCATTGATGGGCATTGAGTTCCTTTGTAGGGTAGCTGATGTCCTCAATGATTATCTTGGAGGGTTGAACGAAGATCTGATAAAAGACAACTTTATTATTGTATATGAGCTGCTGGATGAGATGATAGACAATGGCTTCCCGCTAACTACTGAACCTAATATCCTGCAAGAAATGATAGCTCCACCAAGTATTGTTAGCAAAGTGTTGACTGTTGTGACTGGCAACAGTTCAAATGTGAGTGACACCCTTCCAGGTGCAACGGCATCTTGTGTTCCCTGGAGAACAGCTGAACTGAAGTATGCCAATAATGAAGTTTATGTAGATCTTGTTGAGGAAATGGATGCCATAATAAGCAGGGATGGAGTTCTTGTGAAATGTGAGATCTATGGTGAAGTTCAAGTAAATTCCCACATCACTGGTGTTCCTGATTTGACTCTTTCATTTTCAAATCCCTCTATACTAGATGATGTCAGGTTCCATCACTGTGTTCGATTTCAGCCTTGGGAATCTCATCAAATTCTTTCATTTGTGCCTCCTGATGGACAGTTTAAGCTAATGAATTACAGGGTTAGAAAATTAAAGAGCACCCCAATATATGTAAAGCCACAGTTAACTTCAGATGGTGGAACATGTCGTGTTAATGTATTGGTTGGAATACGAAATGACCCTGGAAAGACAATTGACTCAGTTACTGTTCAGTTTATGCTTCCTCCTTGCATCTTATCAGCTGATCTCACTTCAAATCACGGAACAGTAAACATCCTCGCTAACAAGACATGCACTTGGTCCATCGGACGGATCCCAAAAGATAAAGCTCCTTCAATGTCTGGAACGTTTGTGCTTGAGAATGGATTGGAGCGCCTTCATGTCTTCCCAACGTTTCAAGTGGGTTTTAGGATTATGGGCGTTGCCCTCTCTGGTTTGCAAATAGATAAATTGGATCTGAAGAGTGTACCTTGCCGTTTCTATAAAGGCTTCCGGGCTCTAACTCGGGCAGGTGAATTTGAAGTCAGGTCATAG 1419 0.432 MVENFTFKSLLRAIDIGPFLPRARYVLLVYSLLRIVAGVLVSITSDKTGERGGGGSEMLQCIFLLSDSGEVMLEKQLAGHRVDRSICAWFWEQAVSQGDSFKHQPVIASPTHYLFQVFREGITFLACTQVEMPPLMGIEFLCRVADVLNDYLGGLNEDLIKDNFIIVYELLDEMIDNGFPLTTEPNILQEMIAPPSIVSKVLTVVTGNSSNVSDTLPGATASCVPWRTAELKYANNEVYVDLVEEMDAIISRDGVLVKCEIYGEVQVNSHITGVPDLTLSFSNPSILDDVRFHHCVRFQPWESHQILSFVPPDGQFKLMNYRVRKLKSTPIYVKPQLTSDGGTCRVNVLVGIRNDPGKTIDSVTVQFMLPPCILSADLTSNHGTVNILANKTCTWSIGRIPKDKAPSMSGTFVLENGLERLHVFPTFQVGFRIMGVALSGLQIDKLDLKSVPCRFYKGFRALTRAGEFEVRS 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0019 472 Gene3D - 58 199 - -
Dere02g0019 472 PANTHER AP COMPLEX SUBUNIT MU 58 471 - -
Dere02g0019 472 PIRSF AP_complex_mu 58 472 IPR001392 GO:0006886|GO:0016192|GO:0030131
Dere02g0019 472 Gene3D Mu homology domain, subdomain B 224 467 - -
Dere02g0019 472 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 224 471 IPR036168 -
Dere02g0019 472 PRINTS Clathrin coat assembly protein signature 394 405 IPR001392 GO:0006886|GO:0016192|GO:0030131
Dere02g0019 472 PRINTS Clathrin coat assembly protein signature 287 314 IPR001392 GO:0006886|GO:0016192|GO:0030131
Dere02g0019 472 PRINTS Clathrin coat assembly protein signature 157 184 IPR001392 GO:0006886|GO:0016192|GO:0030131
Dere02g0019 472 Pfam Adaptor complexes medium subunit family 224 471 IPR028565 -
Dere02g0019 472 SUPERFAMILY SNARE-like 58 199 IPR011012 -
Dere02g0019 472 CDD AP3_Mu_N 60 199 - -
Dere02g0019 472 ProSiteProfiles Mu homology domain (MHD) profile. 235 471 IPR028565 -
Dere02g0019 472 Gene3D Mu homology domain, subdomain B 329 470 - -
Dere02g0019 472 CDD AP-3_Mu3_Cterm 224 471 - -
Dere02g0019 472 FunFam AP-2 complex subunit mu, putative 58 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0019 Dere-ChrDere02 153104 160133 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3661 01 50867771 50871395 Dere02g0019 02 153104 160133 CCT
Dere02g0019 02 153104 160133 Dere02g0019 02 153104 160133 ECH