Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3629 ATGACCCAAGGAAAAGGGGTTAAGCAGTTTGGCTCCTACATTGACTCTCTTAGTACTTCTCCTCTTCCCTTTGTCGTGCACACAGAAGGAATTTCAACGTTTCGGCTTCAACAGCAGCATCTACAGGGGCTTCAAGCTAAGAAAGAGTTCCTCTTCATTATGTGGCAAAAGCATCTGTTGGTAGCTTTCTGTTTATGGGCCTTAACATGCTTACTTCTTCCTACTCTCTCTTGTGGGATTTTGAGAATTGGTTTGAAGAAGAGACGTCTTGATCTTGAAAGCATTCGAGCTGCCAGATTTGTAAGAGAAGAGCTGAGACCAGCAAGAGCCGTGAAGGCTGCATATCATGAAGATATGATACCTCTTAAAAACTATCTGGATGCGCAATATTATGGAGAGATCGGAATTGGCACACCCCCACAGACCTTCAGCGTCATATTCGATACTGGTAGTTCCAATTTGTGGGTTCCATCATCAAAGTGCTTTTCTTCGATTGCCTGCTATTTCCATTCTGGGTATGAGTCAAGCAAATCCATTACATACAACGAGAATGGAACATCGTGTGCAATACGATATGGATCTGGATCTATATCTGGTTTTTTCAGTCAAGATAATGTTATAGTTGGTGAAGTGGTTGTAAGGCATCAAGATTTCATCGAGGCTACTAGGGAAACAAGTCTTTCCTTTGCATTAGCTAAGTTTGATGGGATACTTGGACTTGGATTTCAAGAAATCTCTGTTGGAAAAGCAATTCCAGTATGGTACAATATGATGGAGCAAAATCTTGTTAAAGAGAAGGTGTTCTCTTTTTGGCTCAATGGGGATCCGAAGGCAGAAAATGGTGGTGAATTAATACTTGGAGGTGTTGATTCAAATCATTTCAAAGGAATACATACTTATGTTCCAATTACTAGAAAAGGTTACTGGCAGTTTGAAATGGGAGGTTTTCTCATTGGAGGTCTTTCAACAGGCATTTGTGAGGGTGGATGTGCAGCTATAGTGGATTCAGGAACATCTTTGCTTGCTGGTCCAACCTCAATTGTGACTAAAATCAACCATGCCATCGGAGCTGAAGGAATTTTGACTACAAAATGTAAGGAAATTGTTTCAGGATTTGGAGAGGAGATATGGGATCTCTTAGTATCTGGGCTAGATCCGGATGAAATATGTCCACATATTGGTTTATGCTCTGCCTATGGGGACCAATCTAAAAGAATTGGGATTGAGATGGTAATTGAAAAGCTAGAGAGAGGAAGATTGTCGGCTCGAGACGATATTTTGTGTTGGTTATTTTGTGAGTTGGTTGTAGATTGGATCCAAAATCAAGTAAAACAAGAAGGTGAAAAGATATTCCATTCCATAAATCAGTTGTGTGAAAGCATACCAAGTCCATTTGGAGAGTCCATAATAAGCTGTGATAGAATTTCTCATATGCCAAACATTACGCTTACTATTGGAGATAAGCCTTTCAATCTCACTCCAGAGCAGTATATTCTAAAAATTGGAGGAGTTTGTCTCAGTGGATTTATAGCTTTGGATGTACCACCACCCCGGGGTCCTCTTTGGATTCTTGGCGATGTATTTATGAGGGCATATCATACGGTCTTTGACTATGGAAATCTCCGACTGGGCTTTGCTGAAGCTACATAG 1650 0.4067 MTQGKGVKQFGSYIDSLSTSPLPFVVHTEGISTFRLQQQHLQGLQAKKEFLFIMWQKHLLVAFCLWALTCLLLPTLSCGILRIGLKKRRLDLESIRAARFVREELRPARAVKAAYHEDMIPLKNYLDAQYYGEIGIGTPPQTFSVIFDTGSSNLWVPSSKCFSSIACYFHSGYESSKSITYNENGTSCAIRYGSGSISGFFSQDNVIVGEVVVRHQDFIEATRETSLSFALAKFDGILGLGFQEISVGKAIPVWYNMMEQNLVKEKVFSFWLNGDPKAENGGELILGGVDSNHFKGIHTYVPITRKGYWQFEMGGFLIGGLSTGICEGGCAAIVDSGTSLLAGPTSIVTKINHAIGAEGILTTKCKEIVSGFGEEIWDLLVSGLDPDEICPHIGLCSAYGDQSKRIGIEMVIEKLERGRLSARDDILCWLFCELVVDWIQNQVKQEGEKIFHSINQLCESIPSPFGESIISCDRISHMPNITLTIGDKPFNLTPEQYILKIGGVCLSGFIALDVPPPRGPLWILGDVFMRAYHTVFDYGNLRLGFAEAT 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3629 549 Gene3D Acid Proteases 81 288 IPR021109 -
Dere01g3629 549 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 72 547 IPR001461 GO:0004190|GO:0006508
Dere01g3629 549 FunFam Lysosomal aspartic protease 413 548 - -
Dere01g3629 549 CDD phytepsin 120 547 IPR033869 GO:0004190
Dere01g3629 549 Pfam Eukaryotic aspartyl protease 129 548 IPR033121 -
Dere01g3629 549 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 145 156 IPR001969 GO:0004190|GO:0006508
Dere01g3629 549 Gene3D Acid Proteases 289 548 IPR021109 -
Dere01g3629 549 SUPERFAMILY Acid proteases 68 548 IPR021109 -
Dere01g3629 549 ProSiteProfiles Saposin B type domain profile. 360 400 IPR008139 -
Dere01g3629 549 FunFam Lysosomal aspartic protease 117 358 - -
Dere01g3629 549 Pfam Saposin-like type B, region 2 364 396 IPR008138 -
Dere01g3629 549 PRINTS Pepsin (A1) aspartic protease family signature 282 295 IPR001461 GO:0004190|GO:0006508
Dere01g3629 549 PRINTS Pepsin (A1) aspartic protease family signature 332 343 IPR001461 GO:0004190|GO:0006508
Dere01g3629 549 PRINTS Pepsin (A1) aspartic protease family signature 136 156 IPR001461 GO:0004190|GO:0006508
Dere01g3629 549 PRINTS Pepsin (A1) aspartic protease family signature 522 537 IPR001461 GO:0004190|GO:0006508
Dere01g3629 549 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 332 343 IPR001969 GO:0004190|GO:0006508
Dere01g3629 549 Gene3D - 360 462 - -
Dere01g3629 549 SUPERFAMILY Saposin 362 462 IPR011001 -
Dere01g3629 549 ProSiteProfiles Peptidase family A1 domain profile. 130 546 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3629 Dere-ChrDere01 50580691 50589080 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3629 01 50580691 50589080 Dere01g3629 01 50580691 50589080 ECH