Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3438 ATGCAAGCGGAAGATACGACTGTAGTGTTCTTTCATGCGCTTGGAAAGCTCCTAGGGTCCTTACTGGGTTCCTTGCGAGTACAGCTCATTCTCCTCAGTGTGCATCCTTGTCCATTGAGCGAAATGGAAGAAAGAACCGGTGTAATTTTGATACCTGTCAATCTTCAATTTGGACAGGGACGTGAAGCCTTTAATATAGTAGGTTCATATTCAGATGAAGCCTGTAATATTATACTTCCTGGAGGATCCTCTAGATCAATCTTTTCTCAAGTTTCTCCCAAAAGATGGCTATCTTGTTGTTCCTTTTCCTCCTCCTTTTACACTGCCAATGAGGTTTCCCCTAAAAGGTTGTGGGAGGATCTAAAACCTGTCATCTCATACCTTTCTCCTAAAGAACTGGAGTTGGTTTGTAATGCTCTTTTGTTGGCATTTAGAGCGCATGATGGCCAGAGAAGACGCAGCAGTGAACCCTTCATCATTCATCCAGTTGAGGTTGCACGTATTCTTGGAGAACTTGGACTTGACTGGGAATCTATAGCTGCTGGTTTACTGCATGACACAGTTGAGGATACAAATGTTGTGACATTTGAGAGAATTGAGGAGGAGTTTGGTGGTACTGTGCGCCATATTGTGGAAGGAGAGACTAAGGTATCAAAGCTGGGAAAGTTGAAGTACAAGAATGAAAATGATCAAGATGTGAAAGCAGATGATCTTCGACAAATGTTCCTAGCCATGACAGAAGAGGTCCGTGTTATTATTGTCAAATTAGCAGACAGATTACATAACATGCGCACTTTATCATATATGCCTCCACATAAACAGACTAGCATTGCAATGGAGTCATTGCAGGTATTTGCTCCTTTGGCAAAATTGCTTGGGATATATCAAATTAAGTCGGAACTCGAAAACCTATCATTCATGTACACGAATCCAGAAGATTATGCTATGGTTAAAAGAAGAGTTGCAGACCTGTATAAAGAACATGAGAAAGAGCTTCTGGAGGCAAACAAAATATTAGTGAAGAAAATCCAGGACGATCAATTATTAGATCTTTTGACTGTGAAGATTGAAGTTCGTGCTGTGTGTAAAGACCCTTACAGTATCTATAGAGCTGTTCTCAAATCAAAAAGTTCAATCAATAAGATTAACCAAATTGCGCAGCTTCGTATTATCATAAAACCGAAGCCGTGCATTGGGGCTGGGCCTTTATGCAGTCCGCAGCAGATTTGCTATCATGTTCTGGGGTTGGTCCATGGAATATGGACTCCTGTTCCTAGAGCTGTGAAAGATTATATTGCAACTCCCAAACCTAATGGCTACCAGAGTCTCCATACAACTGTGATTCCATTTTTGTATGAGAGTATGTTTCGCCTAGAAGTCCAGATCAGAACTGAAGAAATGGATTTAATAGCTGAGAGAGGAATCGCTGCTCATTATATTGGAAGGGCGTTTGTCACTGGCTTGGTTGGAAGTGCAATGCCTAGGAGTAGAAGCTCAAGAGGAAAAACAGTCTGTCTTAACAATGCAAATATTGCACTCCGAATTGGCTGGCTCAATGCAATTAGAGAGTGGCAAGAAGAGTTTGTTGGCAACATGAGTTCCAGGGAATTTGTAGACACCATTACCAGAGACCTGCTGGGTAGTCGTGTCTTCGTGTTTACACCCAGAGGAGAGATTAAGAATCTTCCCAAGGGCGCTACTGTTATTGACTATGCTTATATGATACACACTGAAATTGGGAACAAAATGGTAGCTGCAAAGGTCAATGGTAATCTTGTTTCTCCCTCGCATGTACTTGCAAATGCAGAAGTGGTGGAGATAATCACATATAATGCACTTTTGAGCAAATCAGCTTTTCAGAGGCATAAGCAGTGGTTGCAACATGCTAAAACACGTAGTGCAAGACACAAAATTATGAAGTTTCTGAGGGAGCAGGCTGCACCTTCTGCTGCTGATATAACAACAGAAGCAGTCAATGACTTTGTCAGTGATTCTGAAGGCGATAGTTCCAGTGGCATCATACCTATGTGGCAGAAAATGATTATGAATGTGACAGAAACATCATCCCCAGAAAAAAGGGAGGTTGTCCTCCGAAGTAAAAATGGAAGTGTTTGGACTCCGAAGATCAATGGAAAACATAACAGGCATGTGCAGCATGTTAGTTTGAAGGGTGAAGGGGAGCTATTGCTGCAGGGAAACTATGTTGCCAAGATTATTCAAGTTAACATTCCAAGATACAAGACATTCCTGCCAGGTTTAGAGAGTTGGCAAGCCCAGAAAATTGCCTCTTGGCATGATATAGAAGGGCATTCCATCCAATGGTTTTGTGTAGTATGCATAGACCGAAAAGGTATCATGGCCGAGGTCACAACAGCACTGGCCATTGCAGGCATAACCATCTGTTCTTGTGTGGCTGAGGTTGATGGAGGGAGGGGAATGGCTGTCATGTTATTTCATTTTGAAGGGAAGTTAGAATGTTTGGTGAGTGCTTCCTCTAGAGTAGATCTAATACTGGGTGTTTTAGGGTGGTCTACTGGCTGCAGCTGGCCAAGCTTGATGGGAAATAATGGTGTTCTCGAATGCTAG 2586 0.4227 MQAEDTTVVFFHALGKLLGSLLGSLRVQLILLSVHPCPLSEMEERTGVILIPVNLQFGQGREAFNIVGSYSDEACNIILPGGSSRSIFSQVSPKRWLSCCSFSSSFYTANEVSPKRLWEDLKPVISYLSPKELELVCNALLLAFRAHDGQRRRSSEPFIIHPVEVARILGELGLDWESIAAGLLHDTVEDTNVVTFERIEEEFGGTVRHIVEGETKVSKLGKLKYKNENDQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSYMPPHKQTSIAMESLQVFAPLAKLLGIYQIKSELENLSFMYTNPEDYAMVKRRVADLYKEHEKELLEANKILVKKIQDDQLLDLLTVKIEVRAVCKDPYSIYRAVLKSKSSINKINQIAQLRIIIKPKPCIGAGPLCSPQQICYHVLGLVHGIWTPVPRAVKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYIGRAFVTGLVGSAMPRSRSSRGKTVCLNNANIALRIGWLNAIREWQEEFVGNMSSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVIDYAYMIHTEIGNKMVAAKVNGNLVSPSHVLANAEVVEIITYNALLSKSAFQRHKQWLQHAKTRSARHKIMKFLREQAAPSAADITTEAVNDFVSDSEGDSSSGIIPMWQKMIMNVTETSSPEKREVVLRSKNGSVWTPKINGKHNRHVQHVSLKGEGELLLQGNYVAKIIQVNIPRYKTFLPGLESWQAQKIASWHDIEGHSIQWFCVVCIDRKGIMAEVTTALAIAGITICSCVAEVDGGRGMAVMLFHFEGKLECLVSASSRVDLILGVLGWSTGCSWPSLMGNNGVLEC 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3438 861 PANTHER GTP DIPHOSPHOKINASE RSH1, CHLOROPLASTIC-RELATED 66 855 - -
Dere01g3438 861 SUPERFAMILY HD-domain/PDEase-like 122 309 - -
Dere01g3438 861 CDD HDc 156 285 IPR003607 -
Dere01g3438 861 Gene3D Beta Polymerase, domain 2 311 465 IPR043519 -
Dere01g3438 861 ProSiteProfiles TGS domain profile. 546 609 IPR004095 -
Dere01g3438 861 CDD TGS_RSH 551 609 IPR033655 -
Dere01g3438 861 CDD NT_Rel-Spo_like 357 473 IPR007685 GO:0015969
Dere01g3438 861 SMART RelA_SpoT_2 363 485 IPR007685 GO:0015969
Dere01g3438 861 Pfam Region found in RelA / SpoT proteins 363 479 IPR007685 GO:0015969
Dere01g3438 861 Gene3D - 775 835 - -
Dere01g3438 861 ProSiteProfiles HD domain profile. 158 263 IPR006674 -
Dere01g3438 861 SMART hd_13 154 272 IPR003607 -
Dere01g3438 861 Gene3D Hypothetical protein af1432 115 309 - -
Dere01g3438 861 FunFam GTP pyrophosphokinase (RelA/SpoT) 542 615 - -
Dere01g3438 861 Gene3D - 543 615 IPR012675 -
Dere01g3438 861 SUPERFAMILY Nucleotidyltransferase 311 481 IPR043519 -
Dere01g3438 861 FunFam GTP pyrophosphokinase RelA 117 310 - -
Dere01g3438 861 Pfam HD domain 139 294 - -
Dere01g3438 861 Pfam TGS domain 550 609 IPR004095 -
Dere01g3438 861 SUPERFAMILY TGS-like 537 609 IPR012676 -
Dere01g3438 861 SUPERFAMILY ACT-like 774 823 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3438 Dere-ChrDere01 48921625 48929034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3438 168 486 EF-hand Containing Proteins AT3G17470 27.273 1.69e-36 141
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3438 01 48921625 48929034 Dere01g3438 01 48921625 48929034 ECH