Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3394 ATGGAGTCCATGTCTCATTCTTCAACCTTCCTCTTACCGAAAGTTCCTCTGCAGGACCGCAGTTTTGTAACCTACGCGCTTGTCATTCTCAACCAAAGCCTCCCTAAATTTGCTTCTCTGCTTTGGGACCACGGTGACTTCGTGCTTGCGCTTGCGTTTTCATGTGGAACAGCACAGCTACGCCTGTGCGCTGATGGAGGTGCCAATCGGGTGTATGATGAAATGCCTCTGTTCTTGCCTCATGAAGATGCTTTGCACGTCCGAACTAGGTACAAGCCGGATGTAATCAAAGGTGACATGGATTCAATCCGGAAAGAAGTACTTGACTTCTATAAAAACCTGGGAACTAGGATAATAGATGAATCTCACGATCAGGATACCACAGACTTGCACAAATGTGTGGCATACATACGCGACCTTACACCAAATATTGATATATCAACAATGTGCATTCTTGTTACTGGAGGACTTGGTGGGCGGTTTGACCATGAGATTGGGAATATCAATACGCTCTGCCGTTTCTCAAACACACGAATTATCCTTCTATCTGATGATTGCCTCATTCACCTTCTTTCAAGGAATCACCTCCATAAGATCTACGTTCAATCTTCCGTGGAAGGTCCTCATTGTGGACTCGTTCCCATTGGGATGCCATCTGGAAGAACTACCACCACTGGACTCCAGTGGGATCTCAATGACACAGAGATGAGATTTGGCGGCTTAATAAGCACTTCAAATATTGTAAAGGAAGATATAGTAACGGTACAGTCGGATTCAGATCTTCTTTGGACTATTTCTATCAAGAAGCTCTAG 813 0.4477 MESMSHSSTFLLPKVPLQDRSFVTYALVILNQSLPKFASLLWDHGDFVLALAFSCGTAQLRLCADGGANRVYDEMPLFLPHEDALHVRTRYKPDVIKGDMDSIRKEVLDFYKNLGTRIIDESHDQDTTDLHKCVAYIRDLTPNIDISTMCILVTGGLGGRFDHEIGNINTLCRFSNTRIILLSDDCLIHLLSRNHLHKIYVQSSVEGPHCGLVPIGMPSGRTTTTGLQWDLNDTEMRFGGLISTSNIVKEDIVTVQSDSDLLWTISIKKL 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3394 270 SUPERFAMILY Thiamin pyrophosphokinase, substrate-binding domain 189 269 IPR036371 GO:0009229
Dere01g3394 270 NCBIfam thiamine diphosphokinase 57 265 IPR006282 GO:0004788|GO:0006772
Dere01g3394 270 Pfam Thiamin pyrophosphokinase, vitamin B1 binding domain 197 262 IPR007373 GO:0009229|GO:0030975
Dere01g3394 270 SUPERFAMILY Thiamin pyrophosphokinase, catalytic domain 13 184 IPR036759 GO:0004788|GO:0005524|GO:0009229
Dere01g3394 270 CDD TPK 26 265 IPR007371 GO:0004788|GO:0005524|GO:0009229
Dere01g3394 270 PANTHER THIAMIN PYROPHOSPHOKINASE 3 268 - -
Dere01g3394 270 Pfam Thiamin pyrophosphokinase, catalytic domain 57 179 IPR007371 GO:0004788|GO:0005524|GO:0009229
Dere01g3394 270 SMART TPK_B1_binding_a_2_a 195 261 IPR007373 GO:0009229|GO:0030975
Dere01g3394 270 Gene3D Thiamin pyrophosphokinase, catalytic domain 22 269 IPR036759 GO:0004788|GO:0005524|GO:0009229
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3394 Dere-ChrDere01 48532156 48534348 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3394 01 48532156 48534348 Dere01g3394 01 48532156 48534348 ECH