Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3388 ATGGCTATGGCTGCAGTTGCTCTGCAGCAGAACTTGCTCTGCTTCTCGAAATGGAAGACGATCACTGCAACGACACCGCACACGCCCATTCTTCTGCATTCAAGAAAGAAGGCTCAATTTTCACTCATTTCCTGCTCGTCTTCCTCGTCTTCTACTTCGCAGACCCCAGAAGCTAACACTGAAACCCCAGAATATTACGTCAATCTGGGTCTCCAGCTCTTCTCCAAAGGACGGGTTAAAGATGCTTTAACCCAGTTTGAAACAGCTCTTTCTTTGAATCCCAATCCTGTGGAGGCCCAAGCTGCGCTTTATAACAAAGCTTGCTGCCATGCATACAGAGGGGAAGGAAAGAAAGCGGCTGATTGTCTCCGCACAGCTCTGAGGGAATACAACCTAAAATATGGTACCATTCTCAATGATCCAGACTTGGCCTCTTTCAGAACTTTGCCTGAATTCCAAGAACTACAGGAAGAGGCCAGGCTGGGTGGTGAAGATATTGGCTACAGCTTTCGGAGAGACCTAAAACTCATCAGTGAAGTTCAAGCTCCATTTCGCGGAGTTAGGAGATTCTTCTATATAGCTTTTACAGCAGCTGCAGGAATTTCCATGTTCTTTACTGTTCCTAGGCTATTTCGTGCAATTAAGGGTGGTGATGACGCTCCTGATCTTTGGGAAACTGCTGGGAATGCAGCCATTAACATTGGAGGTATCATAGCTCTTGTGGCATTATTCTTCTGGGATAATAAAAAAGAGGAGGAACAACTTGCACAGATTTCCCGAGATGAGACACTATCAAGGTTACCTTTGCGCCTTTCAACTAATCGCATTGTTGAACTCGTGCAGCTACGGGACACAGTTAGGCCAGTTATATTAGCAGGGAAAAAAGAAACAGTATCTTTGGCTTTGCAAAGGGCAGAGAAGTTTCGCACCGAGCTCCTTAGACGTGGTGTTCTGTTGGTTCCTGTAACCTGGGGAGAAGGTAAGGAACCAACTGTTGAGAAGAAAGGTTTTGGTCTTCCAGCAAAGGCTGCTGCAGCTCTTCCATCCATTGGGGAAGATTTTGACAAGCGAACACAGTCCATAATTGCAAAATCGAAGTTGAAAGCTGAAATTAGATTCAAGGCTGAGGTTATATCATCGGCAGAATGGGAAAGGTGGATAAGAGATCAGCAGAAGTCTGAAGGAGTTACTCCTGGGGAAGATGTCTACATTATACTGCGGTTAGATGGGCGAGTGCGAAGATCAGGGAAAGGTATGCCTGACTGGCAGCAAATTGTGAAGGAGCTGCCACCAATGGAAGCACTGCTAAGCAAGCTAGAAAGATGA 1326 0.46 MAMAAVALQQNLLCFSKWKTITATTPHTPILLHSRKKAQFSLISCSSSSSSTSQTPEANTETPEYYVNLGLQLFSKGRVKDALTQFETALSLNPNPVEAQAALYNKACCHAYRGEGKKAADCLRTALREYNLKYGTILNDPDLASFRTLPEFQELQEEARLGGEDIGYSFRRDLKLISEVQAPFRGVRRFFYIAFTAAAGISMFFTVPRLFRAIKGGDDAPDLWETAGNAAINIGGIIALVALFFWDNKKEEEQLAQISRDETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSLALQRAEKFRTELLRRGVLLVPVTWGEGKEPTVEKKGFGLPAKAAAALPSIGEDFDKRTQSIIAKSKLKAEIRFKAEVISSAEWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGKGMPDWQQIVKELPPMEALLSKLER 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3388 441 Gene3D Tetratricopeptide repeat domain 41 138 IPR011990 GO:0005515
Dere01g3388 441 ProSiteProfiles TPR repeat profile. 63 96 IPR019734 GO:0005515
Dere01g3388 441 Pfam Low psii accumulation1 / Rep27 171 248 IPR021883 -
Dere01g3388 441 ProSiteProfiles TPR repeat region circular profile. 63 95 - -
Dere01g3388 441 FunFam Protein LOW PSII ACCUMULATION 1, chloroplastic 50 156 - -
Dere01g3388 441 SMART tpr_5 63 96 IPR019734 GO:0005515
Dere01g3388 441 SMART tpr_5 100 133 IPR019734 GO:0005515
Dere01g3388 441 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 44 439 - -
Dere01g3388 441 Pfam Tetratricopeptide repeat 63 95 IPR013105 -
Dere01g3388 441 SUPERFAMILY TPR-like 57 129 IPR011990 GO:0005515
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3388 01 48475502 48479037 Dere01g3388 01 48475502 48479037 ECH