Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3332 ATGAGTTCTGAGGCTACAGCAACGACAGGTAAGGGTGGCAGAGGCAAATCGAAGGGTTCGAAGTCCGTGTCTAGGTCTCAGAAGGCTGGCCTTCAGTTTCCCGTAGGCCGCATTGCCCGTTATCTCAAAATCGGCCGCTATGCTCAGCGTGTTGGATCTGGATCCCCTGTTTACCTCTCTGCTGTTCTTGAATATCTTGCCGCTGAGGTTTTGGAATTGGCTGGGAATGCTGCCAGGGATAACAAGAAGACAAGGATTATACCCAGGCACATTCAACTTGCTGTGAGGAATGACGAGGAACTGAGCAAGCTGTTGGGGTCTGTGACCATTGTAAGTGGTGGTGTGCTGCCGAAAATCCACGCCAATTTGTTACCCAAGAAGAATGGAAAGGGAAAACCCGAGATTGGTTCTGCTAGTCAGGAATTTTAG 429 0.4988 MSSEATATTGKGGRGKSKGSKSVSRSQKAGLQFPVGRIARYLKIGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLLGSVTIVSGGVLPKIHANLLPKKNGKGKPEIGSASQEF 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3332 142 PRINTS Histone H2A signature 79 93 IPR002119 GO:0000786|GO:0003677|GO:0030527
Dere01g3332 142 PRINTS Histone H2A signature 107 125 IPR002119 GO:0000786|GO:0003677|GO:0030527
Dere01g3332 142 PRINTS Histone H2A signature 65 78 IPR002119 GO:0000786|GO:0003677|GO:0030527
Dere01g3332 142 PRINTS Histone H2A signature 21 43 IPR002119 GO:0000786|GO:0003677|GO:0030527
Dere01g3332 142 PRINTS Histone H2A signature 50 65 IPR002119 GO:0000786|GO:0003677|GO:0030527
Dere01g3332 142 FunFam Histone H2A 10 134 - -
Dere01g3332 142 CDD H2A 23 127 IPR002119 GO:0000786|GO:0003677|GO:0030527
Dere01g3332 142 Pfam C-terminus of histone H2A 99 132 IPR032454 -
Dere01g3332 142 ProSitePatterns Histone H2A signature. 29 35 IPR032458 -
Dere01g3332 142 SMART h2a4 10 130 IPR002119 GO:0000786|GO:0003677|GO:0030527
Dere01g3332 142 Pfam Core histone H2A/H2B/H3/H4 10 96 IPR007125 GO:0003677
Dere01g3332 142 SUPERFAMILY Histone-fold 6 106 IPR009072 GO:0046982
Dere01g3332 142 PANTHER HISTONE H2A 15 128 IPR002119 GO:0000786|GO:0003677|GO:0030527
Dere01g3332 142 MobiDBLite consensus disorder prediction 1 28 - -
Dere01g3332 142 Gene3D Histone, subunit A 8 135 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3332 Dere-ChrDere01 48015569 48016119 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3332 01 48015569 48016119 Dere01g3332 01 48015569 48016119 ECH