Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3328 ATGAAGCGGGTGTGGAAACTCTCCGACGCAGCACAGGCAGAGTTGTTCTGCTTCCACAGAACCTCTGCGAAACCCAAACCCCTTAACTCGTTTCCTATTTTCCTCCAAAGCTCCACTAGTTACATATGCACCCGCCAAGTCAATTCATACACTCACTTCTCCGAACCTCCCGTGCTTCGAGATATGATTGGCTTGTTCTCACGCAACCCCCATTACTTTCATTTAATAGCCAGAGAGGATTTGAGGAGGGAAGTTGCAATTTTGGGGGATCAATTGGTTCGGGCGGCCCAGGACTCTAATAGGGTTTTCGAGATCCTGGAGGAGAATTATGACTCTTGGTTTTGGAGTTATCCTGATGGGTCCGCCCTTATTGAGCTCTTGGATCTGTTGAATTCATGGCCTGACTTGGCTCTAATGGTTTTTAATTGGAGAAGAAAAAGTTCTCATGATGGCACTCCCATGGCTCCTTTAGAGTACTCTAAGGGTATCAAAATTGCTGGTAGATCTAGAAATATTGATCTTGCAGTTGAACTCTTCAACGAAGCTGCTAACAAGCTAATAAAAACAACAGCTACTTATAATGCACTGATGAGTGCTTTTATGTTCAATGGTCTTGCTGACAAATGCCAGTCATTATTTCGTCAGATGAAGATGGATGCAACTTGTAGCCCTAACGTAGTAACTTACAACATTGTTATTTCTGTTTTTGGTCGCATGATGCTAATAAATCATGTGGAAGCAACATTGGAGGAGATGCATAATTCACACATCTGCCCGAATATAGGCACTTATAATAATTTGATTGCAGCATATGTTACAGCTTGGAAGTGGGATAGAATGGAACAAACTTTTGAAATTCTTAAGTCAAGCCCTGTCCAACCTGACACCTACACGTACCTGCTAATGATTCGTGGTTATGCTCATTCAGGTAATCTGAAAAGGATGGAAGAGATGTATCAGTTAGTAAGAGATCATGTAAATGTGAATGAAACTCCTTTGATCAGGTCCATGATATGTGCATATTGTAAAAGTTCTGCACCTGATAGAATTAAGAAGATAGAGGAATTACTGAAGTTGATTCCAGAAAAGGAGTACAGGCCATGGCTAAATGTGTGGTTAATTAGGCTTTATGCTCAAGAAGACTGGTTAGATGAAATGGAGAACTCAATTAATGATGCATTTGAGCACAAAGTCTCAGTAGTAACGAGTCGTGTAATGCGATGCATCATTGCAACTTATTTTAGGAAAAATTTACTGGACAAGTTAGAAAATTTTGTGAGGCGTGCTGAATGTTCGAACTGGAAAATTTGCCGCTCTCTATACCATTGTATGATGGTCATGTATGGATCACAAAAGCGCTTAGAGGAAATGGAAAGTGTCCTGGATGTGATGGATAGTGTGAACTTGAATTCAACAAAGAGAACGTTGTTGATTATGTACAATGCTTATGTAAGCTGTGGTCAGAGATCCAAGGTTGAGAAAATGTTGGGACTAATGTGCAAGCGTGGATATGATTTTCCCGAGAGTGCATTTCCATTGTAA 1542 0.4073 MKRVWKLSDAAQAELFCFHRTSAKPKPLNSFPIFLQSSTSYICTRQVNSYTHFSEPPVLRDMIGLFSRNPHYFHLIAREDLRREVAILGDQLVRAAQDSNRVFEILEENYDSWFWSYPDGSALIELLDLLNSWPDLALMVFNWRRKSSHDGTPMAPLEYSKGIKIAGRSRNIDLAVELFNEAANKLIKTTATYNALMSAFMFNGLADKCQSLFRQMKMDATCSPNVVTYNIVISVFGRMMLINHVEATLEEMHNSHICPNIGTYNNLIAAYVTAWKWDRMEQTFEILKSSPVQPDTYTYLLMIRGYAHSGNLKRMEEMYQLVRDHVNVNETPLIRSMICAYCKSSAPDRIKKIEELLKLIPEKEYRPWLNVWLIRLYAQEDWLDEMENSINDAFEHKVSVVTSRVMRCIIATYFRKNLLDKLENFVRRAECSNWKICRSLYHCMMVMYGSQKRLEEMESVLDVMDSVNLNSTKRTLLIMYNAYVSCGQRSKVEKMLGLMCKRGYDFPESAFPL 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3328 513 PANTHER EXPRESSED PROTEIN 44 511 IPR044179 GO:0003729
Dere01g3328 513 Pfam PPR repeat family 259 307 IPR002885 -
Dere01g3328 513 Pfam PPR repeat family 189 236 IPR002885 -
Dere01g3328 513 Coils Coil 78 98 - -
Dere01g3328 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Dere01g3328 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Dere01g3328 513 Pfam PPR repeat 440 466 IPR002885 -
Dere01g3328 513 Gene3D Tetratricopeptide repeat domain 91 254 IPR011990 GO:0005515
Dere01g3328 513 Gene3D Tetratricopeptide repeat domain 255 327 IPR011990 GO:0005515
Dere01g3328 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 325 IPR002885 -
Dere01g3328 513 NCBIfam pentatricopeptide repeat 227 261 IPR002885 -
Dere01g3328 513 Gene3D Tetratricopeptide repeat domain 373 511 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3328 Dere-ChrDere01 47984072 47986149 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3328 192 403 Miscellaneous Gene Families AT4G11690 30.180 5.37e-15 75.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3328 01 47984072 47986149 Dere01g3328 01 47984072 47986149 ECH