Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3238 ATGGAAGAGGGGGAAGCGACCAAAGATGTTGAAGTGGCTCCAGCGCTGATTGCGGTTCACCCGGACCAAAAATCTGTTGCCGTTGCCGTTGGACCATGCCTGCGTGTATTTGACCTTCATGTTGGCTCTGCTGCTTCTTTGATTGATGACTCTGGTGGGCCATTTCATAGAGATTCTATTAGAGCTATTCGGTTTGGTGCAAAAGGGAAGCTCTTTGTATCTGCGGGTGATGATAAAACTGTCAAGATGTGGTCAGCTGAATCTTGGCGCAGCATCTGTACTGTGTCCTCAGAAAAGAGAGTTAGTGCAGTCGCTATAAGCAATGATGGTTCTTATGTGTGTTTTGCGGACAAATTCGGGGTTGTCTGGGTTGTGGATCTGTCTGGATGTGATGGCGATCAACCATTACTTATAAAGAATGCAACACCACTTCTTTCTCACTATTGTAGTATCATCACTAACTTGGAATTTTCACCTGATGGTCGGTTCATTGTTAGTGCTGATCGGGATTTTAAAATTCGTGTTACTGTTTTTCCCAGCAATCCCTTATGTGGTGCTCATGAGATACAAAGTTTCTGTCTTGATCATACAGAGTTTGTTTCCTGCATTGACTTTGTTCATGATCAGGAATGCCCTCAAGGCCTTCTCATATCTGGAAGTGGTGACTCTACTGTCCGTTTGTGGGATGCAACCTCTGGAGCACTCTTTGATACATGTGAGATTGCAATTAAGGCAGGACTCATAGGGTCCAATGGTAAAGCAAAGGAGCATGACTATGCTGTGACTGACTTATGCACGGCCATGGATGGTTCTCTTGTTGCTGTGGCTCTTCAGAGCTTGCAAGGAATAGTATTGCTGAGGTGCAACCTTTCTGCACGAACACTTTCTGTTGCCAAGGTCATTTCTATTGCAGAAGAGGCGTTTGTCCCTACCAGCATTGGAAGCAGCTCCTCTACTGAGATATTGTGGATGGTAATGGGTGTCTCGAGTTTGCCTGGTTCAAGTTATCCCGCTTTGGCTCGTGTCCGAGTAATGTCTGGTTTGGATGTTGAAGAGCCAGCTGTGGTGGAAGATGATAAGATACCTGGGGGCGAGAAATTGCTAGAAACGTTGCAGGGAAGCACTTCTGTTGATGAGAATGCTTTCTTGGCAGCTGCTGAAGCTGTCAAAACAGCAATGTGCAATCTGTTGATTAAAAAGCAATACTCTTCAGAGAATAGAGAATCTAGGAAGAGAACCAGAAATGATAGAAAATTTAAAAAGTAA 1266 0.4463 MEEGEATKDVEVAPALIAVHPDQKSVAVAVGPCLRVFDLHVGSAASLIDDSGGPFHRDSIRAIRFGAKGKLFVSAGDDKTVKMWSAESWRSICTVSSEKRVSAVAISNDGSYVCFADKFGVVWVVDLSGCDGDQPLLIKNATPLLSHYCSIITNLEFSPDGRFIVSADRDFKIRVTVFPSNPLCGAHEIQSFCLDHTEFVSCIDFVHDQECPQGLLISGSGDSTVRLWDATSGALFDTCEIAIKAGLIGSNGKAKEHDYAVTDLCTAMDGSLVAVALQSLQGIVLLRCNLSARTLSVAKVISIAEEAFVPTSIGSSSSTEILWMVMGVSSLPGSSYPALARVRVMSGLDVEEPAVVEDDKIPGGEKLLETLQGSTSVDENAFLAAAEAVKTAMCNLLIKKQYSSENRESRKRTRNDRKFKK 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3238 421 FunFam tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit 13 98 - -
Dere01g3238 421 SMART WD40_4 142 177 IPR001680 GO:0005515
Dere01g3238 421 SMART WD40_4 88 126 IPR001680 GO:0005515
Dere01g3238 421 SMART WD40_4 40 85 IPR001680 GO:0005515
Dere01g3238 421 SMART WD40_4 187 229 IPR001680 GO:0005515
Dere01g3238 421 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 23 413 IPR028884 GO:0036265
Dere01g3238 421 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 53 88 - -
Dere01g3238 421 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 193 233 - -
Dere01g3238 421 Gene3D - 52 299 IPR015943 GO:0005515
Dere01g3238 421 SUPERFAMILY WD40 repeat-like 16 278 IPR036322 GO:0005515
Dere01g3238 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 56 94 IPR001680 GO:0005515
Dere01g3238 421 ProSitePatterns Trp-Asp (WD) repeats signature. 216 230 IPR019775 -
Dere01g3238 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 193 238 IPR001680 GO:0005515
Dere01g3238 421 Pfam WD domain, G-beta repeat 146 175 IPR001680 GO:0005515
Dere01g3238 421 Pfam WD domain, G-beta repeat 56 85 IPR001680 GO:0005515
Dere01g3238 421 Pfam WD domain, G-beta repeat 195 229 IPR001680 GO:0005515
Dere01g3238 421 FunFam tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit 99 356 - -
Dere01g3238 421 PANTHER WD40 REPEAT PROTEIN 4 13 415 IPR028884 GO:0036265
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3238 Dere-ChrDere01 47162212 47165692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3238 56 278 Miscellaneous Gene Families AT5G08390 26.872 3.51e-07 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3238 01 47162212 47165692 Dere01g3238 01 47162212 47165692 ECH