Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3235 ATGGAGCCAATAGGGTTTAAGTTGGGATTAATCTTAGTCCTTGCGACTATGTTTTATCATGGGACTGATGCTCAGTCAAGTTGCGCAGGGACACTCTTTGGTTTATCTCCATGTCTAAGCTATGTCACTGGAAATGCCACAACCCCATCCGCTTCTTGCTGCACTCAGCTTCTGAGTGTGGTTCAGTCACAACCACAGTGTCTCTGCCCAGCAGCATTTAGTGGAGCTGGTGCAATCTTGGGCATAAAAATTAACCAGACTCTTGCTACGTCACTCCCAGATGCTTGTTATGTCAAAGTCCCACCAACTACCCCGTGTGGTAATGGACCTACGACTCCAGTAAATAGTCCCCCTATAGATTCTTCAAATGGCACACCAGATGCTTCAACTACAACCTCACAGACGAGCATTCCTCAACCTTCAGGAGAAGGGTCCAAAACACTGCCCTCCACGAACCAAAGAGCATCTGATGGAAGCATGAAGGAAACACCAGTTAAACTTAGTAGCCTAGTTATTTTTCTAGTTTCATGCTTGTTCATCAACATGTGA 549 0.4572 MEPIGFKLGLILVLATMFYHGTDAQSSCAGTLFGLSPCLSYVTGNATTPSASCCTQLLSVVQSQPQCLCPAAFSGAGAILGIKINQTLATSLPDACYVKVPPTTPCGNGPTTPVNSPPIDSSNGTPDASTTTSQTSIPQPSGEGSKTLPSTNQRASDGSMKETPVKLSSLVIFLVSCLFINM 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3235 182 CDD AAI_LTSS 35 96 - -
Dere01g3235 182 PRINTS Plant phospholipid transfer protein signature 48 62 IPR000528 GO:0006869|GO:0008289
Dere01g3235 182 PRINTS Plant phospholipid transfer protein signature 83 100 IPR000528 GO:0006869|GO:0008289
Dere01g3235 182 PRINTS Plant phospholipid transfer protein signature 27 43 IPR000528 GO:0006869|GO:0008289
Dere01g3235 182 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 14 159 IPR043325 -
Dere01g3235 182 Pfam Probable lipid transfer 20 106 IPR016140 -
Dere01g3235 182 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 27 107 IPR036312 -
Dere01g3235 182 SMART aai_6 28 106 IPR016140 -
Dere01g3235 182 MobiDBLite consensus disorder prediction 108 161 - -
Dere01g3235 182 Gene3D - 25 104 IPR036312 -
Dere01g3235 182 MobiDBLite consensus disorder prediction 113 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3235 Dere-ChrDere01 47153358 47154143 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3235 11 175 Acyl Lipid Metabolism Gene Families AT2G48130 42.105 1.63e-28 103
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3235 01 47153358 47154143 Dere01g3235 01 47153358 47154143 ECH