Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3233 ATGTCTTCTTTTCTCTCTAACCAGCTACAGTTCTCACGTCCCTCTGCCGCGGGCTTGTTCTTCCTCGAGCGTCCGGCATCTCAGCTTCGTCGCAGGCCACCTTCTTGGTTCATAGGACATTGTGTTGTGACGAGTGATTTGGGAAGATCAGTAAGAAGAGGTTGTGAGCTCCTATTGAGTTCTTGTGTTGTTATACGATTTAAAGAGGGGCATCCTGAAATGGGTTGGAAAGCAGCTGGGAAACTCATTAGGCAGTGGAAGATTCTTAGAGGGGACAATGTAATGATTATTAGGGGCAAAGATAGGGGCGAGACAGAGATTATTAAGCGCATAATTCACTCTCAGAATCGTGTGATTGTTAAGGGCACAAATCTGAATGAATTCAGCCGGAGATTATATTTCTCAAGTATGGCTGAAACAATCCTGGTCCAGGCTCGAGACCCTGCTAAACTGAATATGGAAATAGAAAATGCTATCAATGGGAATCAATTAGATGCATGGAAGTTATTTGAGCAGCATATGCAGATAAATGGATTCCCTAGGAAATTTGTTGTCAACAAGCTTCTAACCACTTTTGTGGAAAGCCTTGAAGTGCAATGGTTAGAAAAAGCTTATGGATTGGTAGAACAGGCCATTGAGGAAAGTAAACAGAACCTGTTAGAGAAAGAAGTACTTATATATCTCTGCTTCGGTCTTGCCAAAGCTGGACTACCAATTCCTGCATCAACTGTTTTAAGAAAGATGATAAATATGGAGCAGTTTCCCCCGGTCAATGCATGGTCTGCAGTTTTGGCCCACATGTCACAAACAGCAGATGGAGCTTACCTTGCTGCTGAGTTGGTTCTTGAGATAAGCTATTTGTTCCAAAATAATAGAGTGGATCCGCGTAAAAAGAGCAATTCTCCTTTGGTAGCTATGAAGCCTGATACTACTGCTTTTAACATTGCTTTGGCAGGATGTCTCTTATTTGAGACAACTAGGAAAGCAGAGCAGCTTCTTGATATGATGCCTCAAATTGGTGTCAAGGCTGATGCAAACTTACTAATAATAATGGCTCATGTATATGAGAGGAATGGACGAAGAGAAGAGCTTAAGAAACTGCAAAGGCACATAGAGGAAGCACCTAATCTTACTGACATTCAGTTCCGCCAATTCTACAACTGTTTGCTCTCATGCCATATGAAATTTGGGGATCTAGATTCTATGTCAAACATGGTTTTGGAAATGCTTAGGAAAGCAAAGGAGGCAAAAAATTCTCTTGCAGCAGCTAAATTTATGACCAACACAACTGAATTTGGCTATAAATATACTCCTGGACTTGCTTCTATGCAAAGTTTGAGCGATAGTCGAGATTCAGACTGTTTAAAACATAACAAACTAATAAGAAAGACTGTCCTATCTTATGAAGAGTTCTCTAGAGATCGGAATTTTTTAAAACTTGAAGCAGAGTCAAAGGCTGTTCTTGATTCTTTGCTAGCCAAGTTGCAGATACAGGTTGACTTGATTACAACTAAACATGGTATACTCCAACCAACTGAATCAATTTATGCGAAACTGGTTAAAGCTTTTCTAGAAGCTGGCAAGACCAAGGATTTGGCAGAGTTTCTAATCAAGGCAGAAAGAGAAGATTCCCCACTTTCCAATGATAGTTCGGTCTTGGTTCATGTCATTAATTCATGTATTTCACTTGGATGGTTGGATCAAGCACATGACCTTCTTGATGAGATGCGGCTAGCTGGAAAAAAAATTGGTTCATCTGTATATGCCTCTCTCTTGAAAGCCTATTGTCAAGCAAATAGGGCCGCGGATGTTGCGTCTCTTTTAAGAGATGCAAGAAAGGATGGTATCCAGCTGGACTCAAGCTCGTATGAGGCCATGATCCAATCCAGGGTGCTTCAGGGGGATACAACGGGAGCACTCCATTTATTCAGAGAGATGAAAGGGGCTAAAATGCCAAAAGTTGGTCAACTGGACTCTCTCATGCCAGCTAAAAGTTTCGTAGAGGAAGATGAATCTGGGTTGATGACGAAGCTGTTGCAGGAAATCAAGGAAGGACAGAAAGTGGATTATGGAGTTCATGACTGGAATAATGTAATCCATTTTTTCTGTAAGAAGAGACTGATGAAAGATGCTGAAAAGGCTTTGAAGAAGATGAGGAGCCTAGGCCATACACCAAATGCACAAACTTTCCATTCTATGGTCACTGGGTATGCTGCTATTGGTGGGAACTATCTGGAGGTAACTGAGCTTTGGGGTGAGATGAAAGCTCTTGCTTCTTCAGTCTCAATGAAGTTTGATCAGGAACTTCTTGATTCAGTGCTGTATACATTTGTGAGGGGTGGATTCTTCAATCGAGCCAATGAAGTCGTATCAATGATGGAAAAAGCTAATATGTTTATTGACAAGTACAAGTACCGAATGCTCTTCTTGAAGTACCATAAAACACTTTATAAAGGCAAGGCTCCAAAGTTTCAGACAGTAACCCAATTAAACAAGAGGGAAGCAGCCCTAGCTTTTAAAAGATGGGCTGTTAAAATCCGGAGGCCTAGCAAGGCGTATAGGAGCATCTGGGTCCATAATCCCTTGTCCCTGGACCAAGAGATACTTCGATGGTTCTTGTGTTAG 2625 0.4152 MSSFLSNQLQFSRPSAAGLFFLERPASQLRRRPPSWFIGHCVVTSDLGRSVRRGCELLLSSCVVIRFKEGHPEMGWKAAGKLIRQWKILRGDNVMIIRGKDRGETEIIKRIIHSQNRVIVKGTNLNEFSRRLYFSSMAETILVQARDPAKLNMEIENAINGNQLDAWKLFEQHMQINGFPRKFVVNKLLTTFVESLEVQWLEKAYGLVEQAIEESKQNLLEKEVLIYLCFGLAKAGLPIPASTVLRKMINMEQFPPVNAWSAVLAHMSQTADGAYLAAELVLEISYLFQNNRVDPRKKSNSPLVAMKPDTTAFNIALAGCLLFETTRKAEQLLDMMPQIGVKADANLLIIMAHVYERNGRREELKKLQRHIEEAPNLTDIQFRQFYNCLLSCHMKFGDLDSMSNMVLEMLRKAKEAKNSLAAAKFMTNTTEFGYKYTPGLASMQSLSDSRDSDCLKHNKLIRKTVLSYEEFSRDRNFLKLEAESKAVLDSLLAKLQIQVDLITTKHGILQPTESIYAKLVKAFLEAGKTKDLAEFLIKAEREDSPLSNDSSVLVHVINSCISLGWLDQAHDLLDEMRLAGKKIGSSVYASLLKAYCQANRAADVASLLRDARKDGIQLDSSSYEAMIQSRVLQGDTTGALHLFREMKGAKMPKVGQLDSLMPAKSFVEEDESGLMTKLLQEIKEGQKVDYGVHDWNNVIHFFCKKRLMKDAEKALKKMRSLGHTPNAQTFHSMVTGYAAIGGNYLEVTELWGEMKALASSVSMKFDQELLDSVLYTFVRGGFFNRANEVVSMMEKANMFIDKYKYRMLFLKYHKTLYKGKAPKFQTVTQLNKREAALAFKRWAVKIRRPSKAYRSIWVHNPLSLDQEILRWFLC 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3233 874 CDD KOW_RPL26 91 125 IPR041988 GO:0003723
Dere01g3233 874 Pfam PPR repeat family 693 738 IPR002885 -
Dere01g3233 874 Gene3D Tetratricopeptide repeat domain 157 442 IPR011990 GO:0005515
Dere01g3233 874 PANTHER BNAC05G43320D PROTEIN 129 844 - -
Dere01g3233 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 584 618 IPR002885 -
Dere01g3233 874 Pfam PPR repeat 556 579 IPR002885 -
Dere01g3233 874 Pfam PPR repeat 386 412 IPR002885 -
Dere01g3233 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 691 725 IPR002885 -
Dere01g3233 874 SUPERFAMILY Translation proteins SH3-like domain 83 128 IPR008991 -
Dere01g3233 874 Pfam Pentatricopeptide repeat domain 606 649 IPR002885 -
Dere01g3233 874 Gene3D Tetratricopeptide repeat domain 664 848 IPR011990 GO:0005515
Dere01g3233 874 Gene3D Tetratricopeptide repeat domain 503 662 IPR011990 GO:0005515
Dere01g3233 874 Gene3D - 83 139 IPR014722 -
Dere01g3233 874 NCBIfam pentatricopeptide repeat 695 727 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3233 Dere-ChrDere01 47134460 47142239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3233 552 808 Miscellaneous Gene Families AT4G11690 19.455 7.26e-06 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3233 01 47134460 47142239 Dere01g3233 01 47134460 47142239 ECH