Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3041 ATGGAGGACGAGGCTGATATATACGATGGTATTAGAGCTCAATTCCCTCTTACTTTTGGAAAGCAATCCAAGTCTCAAACCCCTCTTGAATCCATCCACAATGCCACTCGTCGTTCCACTTCCAATCTCACCCCTAAACCCGCTTCTTCTTCTTCTCCTTCCTCCCATCCCTCTACCACAACCACCGACACCAAAAATACCAATGACCTTCCTTCTCTCTCCTCCTCTTCCAAGGCCTGGCTTGTTTCCCTCCGCAACTCTAAAAACCCTAACCCTGATTCTACCGCCGATCGTGGTGGCGGTGCTTCCACAATTGGGCCGCATCGGCCATCGCTGCCGGTGGACTCTGATGAGGATGGCGGTGTTATGGTGGGACAGCCTCGGCCGCCTGAGGAGGAAGAGGATGATGGTGCGATGATTGGACCTCCTCGACCGCCTGTTGGTTTGGGTTCGGGTGAAGAAGGTGATGAGGATGGCGAGATGATTGGCCCGCCAAGGCCACCACCTGGTTCAAATTTGGGCGCGTCGAGTTCTGAGGATGACTCGGACGAAGACGAGGTGGGGAATCGGTTTCGAATTCCGCTTAGCAACGAGATTGTGCTGAAGGGCCACACTAAGGTGGTGTCTGCTCTTGCTGTGGATCACTCCGGGTCTCGAGTACTTTCTGGAAGTTATGACTATACAGTACGAATGTATGACTTTCAAGGAATGAATTCGCGTTTGCAATCATTTCGACAGCTGGAACCATTTGAAGGTCATCAAGTTCGGAATCTAAGCTGGAGTCCAAGTGCAGATCGCTTTTTGTGTGTGACAGGATCAGCTCAAGCAAAGATTTATGACCGTGATGGGCTTACGTTGGGAGAGTTTGTGAAGGGGGACATGTATATTCGTGATCTAAAAAATACTAAAGGCCACATATCTGGATTGACAAGTGGACATTGGCACCCAAAAACTAAGGAAACAATTTTAACATCATCTGAGGATGGGTCACTGCGTATATGGGATGTAAATGACTTCAAAAGTCAGAAACAGGTTATCAAACCAAAGCTTGCAAGACCTGGAAGAGTTCCTGTCACCACTTGTGCATGGGATCACGAAGGTAAATGCATTACTGGTGGTATAGGAGATGGTTCTATACAGATTTGGAGTATTAAGCCTGGGTGGGGGAGCAGGCCAGATGTACATGTTGAGAAAGGGCATTCAGATGATATTACTGGACTGAAATTTTCTAATGATGGGAAAATTTTACTGTCAAGAAGCTTTGATGGCTCATTGAAGGTTTGGGATTTGCGTAAAATGAAGGAACCTCTAAAGGTATTCGATGATCTTCCAAATCACTATGGGCAAACTAATATTGCCTTCAGTCCTGATGAGCAACTCTTTTTCACCGGAACATCTATTGAAAGGGAGAGTTCAAGTGGAGGTTTATTGTGCTTCTATGATCGTGTAAACCTTGAGCTTGTTTCAAGAGTTGGTATATCTCCCAACTCTAGTGTTGTGCAGTGTACTTGGCACCCTAAACTGAATCAGATCTTTGCAACTATTGGTGATAAAAGCCAAGGAGGAACTCACATACTATATGATCCAACCCTCAGTGAAAGAGGAGCTCTTGTTTGTGTTGCACGTGCGCCAAGGAAAAAATCTATTGATGACTTTGAGGCAAAACCTGTTGTGCACAATCCTCACGCCTTACCACTGTTTAGAGATCAGCCAAGCCGCAAGCGTCAACGTGAAAAAGTACTCAAGGATCCACTGAAGTCCCATAAGCCTGAACTTCCCATAACAGGACCTGGCTTTGGTGGACGAGTTGGTACAAGTCAAGGAAGCTTACTGACTCAATATCTTCTGAAGCAAGGGGGTATGATTAAGGAGACATGGATGGAAGAAGATCCAAGAGAAGCTATTCTGAAATATGCTGATGCTGCGGCGAAGGATCCAAAGTTCATTGCTCCAGCATATGCAAAAACCCAGCCTGAGCCTGTCTTTCAGAAGTCAGATTCTGATGAGGAAGAGAAATGA 2019 0.4631 MEDEADIYDGIRAQFPLTFGKQSKSQTPLESIHNATRRSTSNLTPKPASSSSPSSHPSTTTTDTKNTNDLPSLSSSSKAWLVSLRNSKNPNPDSTADRGGGASTIGPHRPSLPVDSDEDGGVMVGQPRPPEEEEDDGAMIGPPRPPVGLGSGEEGDEDGEMIGPPRPPPGSNLGASSSEDDSDEDEVGNRFRIPLSNEIVLKGHTKVVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPFEGHQVRNLSWSPSADRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHISGLTSGHWHPKTKETILTSSEDGSLRIWDVNDFKSQKQVIKPKLARPGRVPVTTCAWDHEGKCITGGIGDGSIQIWSIKPGWGSRPDVHVEKGHSDDITGLKFSNDGKILLSRSFDGSLKVWDLRKMKEPLKVFDDLPNHYGQTNIAFSPDEQLFFTGTSIERESSSGGLLCFYDRVNLELVSRVGISPNSSVVQCTWHPKLNQIFATIGDKSQGGTHILYDPTLSERGALVCVARAPRKKSIDDFEAKPVVHNPHALPLFRDQPSRKRQREKVLKDPLKSHKPELPITGPGFGGRVGTSQGSLLTQYLLKQGGMIKETWMEEDPREAILKYADAAAKDPKFIAPAYAKTQPEPVFQKSDSDEEEK 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3041 672 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 9 671 - -
Dere01g3041 672 ProSitePatterns Trp-Asp (WD) repeats signature. 322 336 IPR019775 -
Dere01g3041 672 ProSiteProfiles Trp-Asp (WD) repeats profile. 397 438 IPR001680 GO:0005515
Dere01g3041 672 SMART WD40_4 292 335 IPR001680 GO:0005515
Dere01g3041 672 SMART WD40_4 339 383 IPR001680 GO:0005515
Dere01g3041 672 SMART WD40_4 390 429 IPR001680 GO:0005515
Dere01g3041 672 SMART WD40_4 194 233 IPR001680 GO:0005515
Dere01g3041 672 SMART WD40_4 243 280 IPR001680 GO:0005515
Dere01g3041 672 MobiDBLite consensus disorder prediction 1 187 - -
Dere01g3041 672 ProSiteProfiles Trp-Asp (WD) repeats profile. 302 344 IPR001680 GO:0005515
Dere01g3041 672 ProSiteProfiles Trp-Asp (WD) repeats profile. 201 242 IPR001680 GO:0005515
Dere01g3041 672 CDD WD40 200 519 - -
Dere01g3041 672 MobiDBLite consensus disorder prediction 651 672 - -
Dere01g3041 672 FunFam WD repeat-containing protein 70 290 532 - -
Dere01g3041 672 MobiDBLite consensus disorder prediction 18 98 - -
Dere01g3041 672 Pfam WD domain, G-beta repeat 395 429 IPR001680 GO:0005515
Dere01g3041 672 Pfam WD domain, G-beta repeat 357 383 IPR001680 GO:0005515
Dere01g3041 672 Pfam WD domain, G-beta repeat 199 233 IPR001680 GO:0005515
Dere01g3041 672 Pfam WD domain, G-beta repeat 300 335 IPR001680 GO:0005515
Dere01g3041 672 PRINTS G protein beta WD-40 repeat signature 322 336 IPR020472 -
Dere01g3041 672 PRINTS G protein beta WD-40 repeat signature 220 234 IPR020472 -
Dere01g3041 672 PRINTS G protein beta WD-40 repeat signature 416 430 IPR020472 -
Dere01g3041 672 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 397 431 - -
Dere01g3041 672 Gene3D - 290 530 IPR015943 GO:0005515
Dere01g3041 672 Gene3D - 169 289 IPR015943 GO:0005515
Dere01g3041 672 SUPERFAMILY WD40 repeat-like 185 517 IPR036322 GO:0005515
Dere01g3041 672 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 201 235 - -
Dere01g3041 672 MobiDBLite consensus disorder prediction 581 600 - -
Dere01g3041 672 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 302 337 - -
Dere01g3041 672 FunFam Nucleotide binding protein 143 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3041 Dere-ChrDere01 44937254 44940996 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3041 304 506 Miscellaneous Gene Families AT5G08390 24.390 1.52e-08 56.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3041 01 44937254 44940996 Dere01g3041 01 44937254 44940996 ECH