Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3037 ATGACGGGATTTCCTCGGCCTCATGATCAGACCTCAACTTCATCCTCGTCTTCCTATAATTCCAACAGCAGTGGTAAAAATGTATTTAGTTTGCTAGCACGGAGAGAGATTTCTGCGAGGTCAAAACATGTGCCAAAACGGCACTGGGGAGGAGCTTCTAAACCAAAAAGTGGTTCTTGCTCTCATTCTAAAATTGATGCAGTGAGAGATGCGAAACGAGGTCTTCTCTCATGGGTTGAGGCAGAGTCATTGCGGCATTTGTCAGCTAAGTATTGTCCTTTGTTGCCTCCCCCACGATCTACTATTGCGGCTGCATTTAGTCCAGATGGAAAAGTGCTTGCATCCACACATGGTGACCACACAGTAAAGATAATTGATTGTGAAACTGGAAGTTGCTTAAAGGTGTTAATTGGCCATAGGAGGACCCCTTGGGTGGTTAGGTTCCATCCTTTGCACCCACATATACTAGCTAGTGGGAGCTTGGATCAAGAAGTTCGCTTATGGGATGCTAACACATCAGAGTGCATATTATCTCACCACTTCTATCGTCCCATTGCATCCATTGCTTTCCATGCCAAATGGGAAATACTTGCTGTTGCTTCTGGCCACAAGCTGTACATATGGCACTACAACAAGAGAGGTGAAGCATCCTCACCAACATTTGTGTTGAAGACAAGGCGTTCACTTCGGGCCGTTCACTTTCACCCACATGCGGCACCGTACCTTTTAACGGCTGAGGTCAATGATCTTGACTCATCAGATTCCGCAATGACGCAGGCAACATCCCTTGGTTATTTACAATACCCTCCACCTGCTGTGATCGTTGCAAATATTCATTTTAAGGAACAAATTAGTTTGTCTAGTGAACTACCTTATATGTCGTTACCGTTTTTCTTCTTGCCTTCATATAATGTTGATGATTCAAGAATGGAACCACAGAATGCCAGTCTTGTTGCTGGTTCAGATAACATGCAAGTTGAATCTTCTGCCTCAGTGCAGTTTCAGGCAGTCACAAATCCTACCGAGCAATATGATAATAAAGTGTCTCCCATGGATACATTCTCTGAGATTCCTACTAGCTCACAAACTGGTACAGAATACAATGCCCATGCTACATTCTCCAACGGAATGGGAATTGGTATTGGTAACCTTGCCGTGGATGGTATGGAAACTGATGAAACAGAACCAGCTGAAGGAAGCCAACATGGAAACTCTACTAATGTCTATTCTCTAAGTCGTGTGCTGCATGGACTATATAGACAAACAGCAAATCGTGAGGGTCCCTCTGAGTTGGGTCAATTTCACCAGTTTTTTCCTCCAAGAGATCCAAGTGGATGGGAGTTACCCTTTCTGCAAGGATGGTTAATGGGTCAAAGCCAAGTCGGTGTTCCTTTGGTGCTTCCTCATATGGGTGGTAGTCGTGAGAGTCTAGCTCAACAGATTGGATTCTCCACCATGGCATCTAATTTGTCCACTCACGAGGATGAAGCAACAATTTCATCTTCAGCCATGTCTGGGAGCACAAGTATACCAGTAGCTTCGGGAAGATCTGGTTTACGGAGTCATTTTCCACAATCTCAAGTTCCTGCATCTGAATCTAATATCCAACATGATGGGAATGATATTCAAACCATTATTAGTCGGATCCAGTCAGAACTTGCCACTTCAATGGCAGCTGCAGCTGCTGCAGAGTTGCCTTGCACAGTGAAGCTAAGAGTATGGTCGCACGACGTAAAAAATCCCTGTGCCCCACTAAATGCTGAAAGATGCCGCCTAACAATACCTCATGCTGTCCTGTGCAGTGAAATGGGTGCCCATTTTTCACCCTGTGGTAGATTTTTAGCTGCATGTGTTGCATGTATGCTTCCTCATATTGAAACTGATCCAGGATTACAAACTCAAGTACAACAAGAGCCTGGAATTGTAACATCCCCAACACGACATCCAATCTCAGCACATCAAGTTATGTACGAGCTTCGCATCTATTCTCTTGAGGAGGCAACATTTGGAATGGTGCTTGCATCGCGGGCAATTAGAGCAGCTCACTGTCTGACTTCAATCCAGTTCTCACCTACATCCGAGCACATACTGCTTGCCTATGGTAGACGTCATGGGTCTCTTCTTAAAAGCATTGTTATTGATGGAGAAACAACCTTGCCTATATATACTGTGTTAGAGGTATACAGAGTGTCAGACATGAAACTTGTCATGGTGCTTCCTAGTGCAGAGGATGAGGTCAATGTGGCATGCTTTCATCCTTTTCCGGGGGGAGGGCTTGTCTATGGAACTAAGGAAGGAAAGCTTAGGGTCCTCCACTATGACGGAGCTCACGCTGTAAATGGCACTGGAGCAAGTTACTTGCCTGAGGAGAACATTATCGGAGCCAATTAA 2391 0.4488 MTGFPRPHDQTSTSSSSSYNSNSSGKNVFSLLARREISARSKHVPKRHWGGASKPKSGSCSHSKIDAVRDAKRGLLSWVEAESLRHLSAKYCPLLPPPRSTIAAAFSPDGKVLASTHGDHTVKIIDCETGSCLKVLIGHRRTPWVVRFHPLHPHILASGSLDQEVRLWDANTSECILSHHFYRPIASIAFHAKWEILAVASGHKLYIWHYNKRGEASSPTFVLKTRRSLRAVHFHPHAAPYLLTAEVNDLDSSDSAMTQATSLGYLQYPPPAVIVANIHFKEQISLSSELPYMSLPFFFLPSYNVDDSRMEPQNASLVAGSDNMQVESSASVQFQAVTNPTEQYDNKVSPMDTFSEIPTSSQTGTEYNAHATFSNGMGIGIGNLAVDGMETDETEPAEGSQHGNSTNVYSLSRVLHGLYRQTANREGPSELGQFHQFFPPRDPSGWELPFLQGWLMGQSQVGVPLVLPHMGGSRESLAQQIGFSTMASNLSTHEDEATISSSAMSGSTSIPVASGRSGLRSHFPQSQVPASESNIQHDGNDIQTIISRIQSELATSMAAAAAAELPCTVKLRVWSHDVKNPCAPLNAERCRLTIPHAVLCSEMGAHFSPCGRFLAACVACMLPHIETDPGLQTQVQQEPGIVTSPTRHPISAHQVMYELRIYSLEEATFGMVLASRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTLPIYTVLEVYRVSDMKLVMVLPSAEDEVNVACFHPFPGGGLVYGTKEGKLRVLHYDGAHAVNGTGASYLPEENIIGAN 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3037 796 SMART WD40_4 172 209 IPR001680 GO:0005515
Dere01g3037 796 SMART WD40_4 88 126 IPR001680 GO:0005515
Dere01g3037 796 SMART WD40_4 732 772 IPR001680 GO:0005515
Dere01g3037 796 SMART WD40_4 129 169 IPR001680 GO:0005515
Dere01g3037 796 Gene3D - 99 286 IPR015943 GO:0005515
Dere01g3037 796 MobiDBLite consensus disorder prediction 39 63 - -
Dere01g3037 796 ProSitePatterns Trp-Asp (WD) repeats signature. 156 170 IPR019775 -
Dere01g3037 796 SUPERFAMILY WD40 repeat-like 605 774 IPR036322 GO:0005515
Dere01g3037 796 Pfam WD domain, G-beta repeat 130 169 IPR001680 GO:0005515
Dere01g3037 796 Pfam WD domain, G-beta repeat 103 126 IPR001680 GO:0005515
Dere01g3037 796 PANTHER ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1 22 792 - -
Dere01g3037 796 ProSiteProfiles Trp-Asp (WD) repeats profile. 136 178 IPR001680 GO:0005515
Dere01g3037 796 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 136 174 - -
Dere01g3037 796 FunFam Activating molecule in BECN1-regulated autophagy protein 83 263 - -
Dere01g3037 796 MobiDBLite consensus disorder prediction 1 25 - -
Dere01g3037 796 SUPERFAMILY WD40 repeat-like 103 245 IPR036322 GO:0005515
Dere01g3037 796 MobiDBLite consensus disorder prediction 499 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3037 Dere-ChrDere01 44894049 44901933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3037 63 208 Miscellaneous Gene Families AT5G08390 32.051 1.04e-06 50.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3037 01 44894049 44901933 Dere01g3037 01 44894049 44901933 ECH