Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3036 ATGGAGAATTCATCTGATGTACTTGGCTCAAAAGGCTTGATTAAAAAACATGAATTTGTGAGGATCATAATTCAGTGTCTATATTCATTAGGGTACAGTAAATCTGCATCATACTTGGAATTGGAATCTGGTATTTCATTCAAGTCTGCAGAATTTCAGTTGCTTGAATCACAGATACTTAGTGGGAATTGGGATGGTTGTGTCAGCACTCTTAATTTTATGAAGGATATGATTGATGAAACTAGAGAATCCGCTCTGTTTCTTGTCTTCAGACAGTGTCTTCTGGAGTATTTGAGTTGTGGCCAGGATAGTTTAGCTTTGAATGTATTGAGGAAACAGGTCTCTGCATTACATGTGGACAAATACAAGGTTCACAGCCTGGCCAATAGCATGCTTTCTTTGAAGGATATGGAGTTAGGTCTAATAGATGGCACCACTGTTCATGATTTACGAAGGAAGTTGTTAACTGATTTGGAAAAATTGCTCCCTCCTCCAATAACAGTACCTGAAAGAAGGCTGGAGCATTTAGTAGAAACCACTGTTACTGCCTGGATCGATTCTTGTATGTATCATAGTTCGTCCAATCCAATTTCACTTTATGAGGACCATTGTTGTAGTCGGGATCACATTCCTACTGAAACCACTCAGATCTTGACTGGGCATAAAAATGAAGTTTGGTTTGTGCAATTTTCTAATAATGGAGAGTACCTTGCCTCTTCATCTAATGATTGCACTGCCATCATATGGAAGGTGCTGGAAGATGGAAAATTGATACTGAAACATTTACTACATGGTCACCAAAGTCCTGTATCATTTGTCGCATGGAGTCCTGATGACACCATGTTGCTCACATGTGGGAACGCAGAAGTATTGAAGCTGTGGGATATTGAAACAGGTAGTTGCAAGCACACATTTGGGAGTCATGGCTTTGTTGTCAGCTCATGTGCCTGGTTTCCCAACTCAAAGCATATGGTGTGTGGCAGTTCCGACCCTGAAAAGGGCATCTGCATGTGGGATTGTGAGGGAAACGAGCTAAAAGCTTGGAGAGGAGTGAGGGTGCCCAAAGTTCTAGATCTTGCTGTTACACCAGATGGGGAGTACCTTATCACCATATTCATGGATAAAGACATTCGGATTTTGCATATGGGAACTAATGCAGAGCGTGTCATCAGAGAGGAGCACCCTATCACATCCCTCTCCGTATCAGGAGATGGCAAGTTCTTCATCGTCAATCTAAATAGTCAGGAGATTCATATGTGGGATGTGGACGGGAAATGGGATAAGCCATTGAGGTATAAGGGCCACAAGCAACATAAATATGTGATCAGGTCATGCTTCGGTGGATTAAATAGCACATTCATTGCCAGTGGTAGCGAGAATTCACAGGTGTACATTTGGAACCGCAGGAACTCAAAGCCAATAGAGGTTTTATCTGGGCACACAATGACTGTGAACTGTGTGAGCTGGAACCCTAGAAGACCACAAATGTTGGCATCTGCAAGTGATGATTACACAATTCGTATATGGGGACCCAGCTTATCATAA 1545 0.4201 MENSSDVLGSKGLIKKHEFVRIIIQCLYSLGYSKSASYLELESGISFKSAEFQLLESQILSGNWDGCVSTLNFMKDMIDETRESALFLVFRQCLLEYLSCGQDSLALNVLRKQVSALHVDKYKVHSLANSMLSLKDMELGLIDGTTVHDLRRKLLTDLEKLLPPPITVPERRLEHLVETTVTAWIDSCMYHSSSNPISLYEDHCCSRDHIPTETTQILTGHKNEVWFVQFSNNGEYLASSSNDCTAIIWKVLEDGKLILKHLLHGHQSPVSFVAWSPDDTMLLTCGNAEVLKLWDIETGSCKHTFGSHGFVVSSCAWFPNSKHMVCGSSDPEKGICMWDCEGNELKAWRGVRVPKVLDLAVTPDGEYLITIFMDKDIRILHMGTNAERVIREEHPITSLSVSGDGKFFIVNLNSQEIHMWDVDGKWDKPLRYKGHKQHKYVIRSCFGGLNSTFIASGSENSQVYIWNRRNSKPIEVLSGHTMTVNCVSWNPRRPQMLASASDDYTIRIWGPSLS 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3036 514 FunFam WD repeat-containing protein 26 homolog 205 510 - -
Dere01g3036 514 SUPERFAMILY WD40 repeat-like 208 509 IPR036322 GO:0005515
Dere01g3036 514 CDD WD40 215 509 - -
Dere01g3036 514 SMART WD40_4 383 421 IPR001680 GO:0005515
Dere01g3036 514 SMART WD40_4 211 250 IPR001680 GO:0005515
Dere01g3036 514 SMART WD40_4 298 339 IPR001680 GO:0005515
Dere01g3036 514 SMART WD40_4 256 295 IPR001680 GO:0005515
Dere01g3036 514 SMART WD40_4 425 467 IPR001680 GO:0005515
Dere01g3036 514 SMART WD40_4 341 381 IPR001680 GO:0005515
Dere01g3036 514 SMART WD40_4 470 510 IPR001680 GO:0005515
Dere01g3036 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 304 IPR001680 GO:0005515
Dere01g3036 514 PANTHER WD REPEAT PROTEIN 26-RELATED 2 512 - -
Dere01g3036 514 Pfam WD domain, G-beta repeat 472 509 IPR001680 GO:0005515
Dere01g3036 514 Pfam WD domain, G-beta repeat 214 250 IPR001680 GO:0005515
Dere01g3036 514 Pfam WD domain, G-beta repeat 299 338 IPR001680 GO:0005515
Dere01g3036 514 Pfam WD domain, G-beta repeat 432 467 IPR001680 GO:0005515
Dere01g3036 514 Pfam WD domain, G-beta repeat 261 295 IPR001680 GO:0005515
Dere01g3036 514 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 48 105 IPR006595 -
Dere01g3036 514 ProSiteProfiles LIS1 homology (LisH) motif profile. 15 47 IPR006594 GO:0005515
Dere01g3036 514 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 477 514 - -
Dere01g3036 514 Gene3D - 205 512 IPR015943 GO:0005515
Dere01g3036 514 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 300 - -
Dere01g3036 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 218 251 IPR001680 GO:0005515
Dere01g3036 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 477 514 IPR001680 GO:0005515
Dere01g3036 514 SMART ctlh 48 105 IPR006595 -
Dere01g3036 514 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 218 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3036 Dere-ChrDere01 44887756 44892380 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3036 212 369 Miscellaneous Gene Families AT5G08390 30.380 7.23e-16 79.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3036 01 44887756 44892380 Dere01g3036 01 44887756 44892380 ECH