Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2963 ATGGATCTGGAGAAAGGTCTCGCCGTAAACCCTCCCTCTGAACCCTCCACACCCACCACCCCTCGTCCCACTCTGTTCCTCTCCACTTCTGGCAAGGCCCTCCTCGTTTCCAACTCCGGCAAATCCCTCCTCTCCAGTTCCAGCAAGGCCCTTCTCGTTTCCAATTCTAGTAAATCCATCGTCTCCAATTCTGGCAAGCGATTCGACAAGAAGAAGTACGTCAAGCAGGTCACCGGCCGCCACAATGACACCGAGCTTCACCTCGCCGCCCAGCGCGGGGATTTCGCCGTCATTCGCCAGATTCTGGGAGAAATCGATGCCCAGATGGTTGGAACCCAAAGTGGGGCTGATTTTGATGCCGAGCTCGAGGAGATTAGGTCCGCCATTGTCAACGAGGTGAACGAGTTGGGAGAGACGGCTTTGTTTGTAGCAGCTGAGAGGGGCCACATTGACGTGGTGAATGAACTCCTGCCCTATGCCACCGGCGAGGGCCTTTCCTTGAAAAATCGGTCCGGCTTCGATCCCTTGCATATTGCAGCTAGCCAAGGTCACCTAGCCATTGTTCAGTTGCTACTGGACCATGATCCAGAGCTAATAAATACATTGGGCCAATCAAATGCAACTCCTCTTATATCGGCGGCTACAAAAGGGCATGCAGATGTTGTTGATCTGTTGTTATCTCGAGATTCTAGTATGGTGGAGTTATCTAGATCCAATGGAAAGAATGCACTCCATTTAGCCGCCCGGCAAGGACATGCTCGTATTGTAAAATCATTACTGAAAACGGATCCACAACTTGCTCGAAGGACTGATAAGAAAGGGCAGACAGCGCTGCATATGGCTGTGAAAGGGGTTAGCTGTGAAGTCGTGAAGTTGCTTCTTGATGCAGATCCTGCAATTGTCATGCTACCTGACAAGTTTAACAATACTGCATTACATATAGCCACCAGGAAGAAGAGGGCAGAGATAGTGAATGAGCTATTACTTCATCCCGATACCAATGTTAATGCCCTAACAAGAGACCGTAAAACATCTCTTGATATTGCCGAAGGACTCCCTCCGTCTGAAGAAATGCTAGAGATAAGAGATTGCCTGACTCGTAATGGTGCAGTTAAAGCCAATGACCTTAATCAACCAAGGGATGAGCTAAGGAAGACTGTGACACAGATTAGGAAGGAAGTCCATATTCAGCTTGAACAAGCACGAAAAACAAACAGGAACGTGGATGGAATTGCCAAGGAGCTACGCAAGCTGCACAGAGATGGGATCAACAACGCTACCAACTCGGTCACAGTGGTGGCTTCGCTCTTTGCAACAGTTGCGTTCGCAGCAATTTTTGCAGTTCCTGGCGGGAATCTTGACAGTGGGATGGCTTTAATGGTATACACTGCATCTTTCAAGATCTTCTTCATCTCTAATGCCATCGCGCTCTTTACGTCACTGGCTGTTGTGGTGGTTCAGATCACAATCGTCAGGGGGGAGACGAAGTCTGAAAGAAGGGTTGTGGAGGTGATTAATAAGTTGATGTGGTTGGCCTCTGTCTGTACCACGATTGCATTCATCTCATCATCTTATATAGTAGTTGGTCGACGCAACAAGTGGGCTGCAATTCTTGTTAGTGTTATAGGGGGAGTTATGATGGCAGGTGTTCTTGGTGCCATGACATACTTTGTGGTTAAGTACAAACGTATTCGAAGGGTGAGAAAGCGAGAGAAACTCTCCAGGAGGTATTCTTGGCATCATTCAGATTCTGATTCAGAAATAAATCCGATTTATGCCATTTGA 1785 0.4801 MDLEKGLAVNPPSEPSTPTTPRPTLFLSTSGKALLVSNSGKSLLSSSSKALLVSNSSKSIVSNSGKRFDKKKYVKQVTGRHNDTELHLAAQRGDFAVIRQILGEIDAQMVGTQSGADFDAELEEIRSAIVNEVNELGETALFVAAERGHIDVVNELLPYATGEGLSLKNRSGFDPLHIAASQGHLAIVQLLLDHDPELINTLGQSNATPLISAATKGHADVVDLLLSRDSSMVELSRSNGKNALHLAARQGHARIVKSLLKTDPQLARRTDKKGQTALHMAVKGVSCEVVKLLLDADPAIVMLPDKFNNTALHIATRKKRAEIVNELLLHPDTNVNALTRDRKTSLDIAEGLPPSEEMLEIRDCLTRNGAVKANDLNQPRDELRKTVTQIRKEVHIQLEQARKTNRNVDGIAKELRKLHRDGINNATNSVTVVASLFATVAFAAIFAVPGGNLDSGMALMVYTASFKIFFISNAIALFTSLAVVVVQITIVRGETKSERRVVEVINKLMWLASVCTTIAFISSSYIVVGRRNKWAAILVSVIGGVMMAGVLGAMTYFVVKYKRIRRVRKREKLSRRYSWHHSDSDSEINPIYAI 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2963 594 ProSiteProfiles Ankyrin repeat region circular profile. 239 261 - -
Dere01g2963 594 ProSiteProfiles Ankyrin repeat profile. 171 198 IPR002110 GO:0005515
Dere01g2963 594 ProSiteProfiles Ankyrin repeat profile. 273 295 IPR002110 GO:0005515
Dere01g2963 594 Pfam Ankyrin repeats (3 copies) 271 336 IPR002110 GO:0005515
Dere01g2963 594 Pfam Ankyrin repeats (3 copies) 86 195 IPR002110 GO:0005515
Dere01g2963 594 Pfam Ankyrin repeats (3 copies) 205 263 IPR002110 GO:0005515
Dere01g2963 594 FunFam Ankyrin repeat-containing protein ITN1 58 197 - -
Dere01g2963 594 FunFam Ankyrin repeat-containing protein ITN1 232 352 - -
Dere01g2963 594 ProSiteProfiles Ankyrin repeat region circular profile. 273 295 - -
Dere01g2963 594 ProSiteProfiles Ankyrin repeat profile. 239 271 IPR002110 GO:0005515
Dere01g2963 594 SMART ANK_2a 136 167 IPR002110 GO:0005515
Dere01g2963 594 SMART ANK_2a 81 110 IPR002110 GO:0005515
Dere01g2963 594 SMART ANK_2a 171 201 IPR002110 GO:0005515
Dere01g2963 594 SMART ANK_2a 273 302 IPR002110 GO:0005515
Dere01g2963 594 SMART ANK_2a 205 234 IPR002110 GO:0005515
Dere01g2963 594 SMART ANK_2a 307 337 IPR002110 GO:0005515
Dere01g2963 594 SMART ANK_2a 239 268 IPR002110 GO:0005515
Dere01g2963 594 Pfam Domain of unknown function 422 527 IPR026961 -
Dere01g2963 594 SUPERFAMILY Ankyrin repeat 86 352 IPR036770 -
Dere01g2963 594 ProSiteProfiles Ankyrin repeat profile. 205 237 IPR002110 GO:0005515
Dere01g2963 594 ProSiteProfiles Ankyrin repeat region circular profile. 171 198 - -
Dere01g2963 594 Gene3D - 195 393 IPR036770 -
Dere01g2963 594 ProSiteProfiles Ankyrin repeat profile. 307 340 IPR002110 GO:0005515
Dere01g2963 594 MobiDBLite consensus disorder prediction 1 25 - -
Dere01g2963 594 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 50 580 - -
Dere01g2963 594 Gene3D - 46 194 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2963 Dere-ChrDere01 44146429 44148894 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2963 3 594 Miscellaneous Gene Families AT3G09550 71.148 0.0 837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2963 01 44146429 44148894 Dere01g2963 01 44146429 44148894 ECH