Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2885 ATGATCAACGCACCCAACGGCATGATATCCACGTCTTCTTCTGCTACCGCACAATCCCCTGGTCTCAAGACTTATTTCAAGACTCCTGAAGGTCGCTACAAGCTTCACTACGAGAAGACACACCCTTCCGCCCTCCTTCACTACGCCCACGGCAAAACTGCCACTCAGGTTACTCTTGCACACCTCAAGGAGAAGCCAGCACCTTCAACACCAACTGCTCCAGCTTCAAGTTTTAGTGCCAGCAGTGGGGTACGGTCAGCAGCTGCTAGATTGTTGGGAGGAGGTAATGGAAGCCGTGCGCTTAGTTTTGTTGGAGGGAATGGTAGCAGCAAGAATATGGGAGTAAACAGTAGGATTGGCTCAATTGGTGCCTCAAGTTCAAGTAGTATAATGGCTAATTCAAATTTTGATGGGAAAGGAACTTACTTGATCTTCAATGTTGGTGATGCAATTTTTGTTAGTGATTTGAATTCTCAAGACAAGGATCCCATAAAGTCTATTCACTTCAGTAATTCAAATCCTGTGTGCCATGCCTTTGACCAAGAAGCTAAGGATGGGCATGATTTGCTCATTGGTTTGAGTACGGGTGATGTCTACTCAGTGTCACTGAGACAGCAATTACAGGATGTTGGTAAAAAGCTTGTAGGAGCTCAGCATTACAACAAAGATGGTTCTGTTAATAACAGTCGTTGTACTAGTGTTGCATGGGTTCCTGGAGGTGATGGTGCTTTTGTTGTGGCTCATGCCGATGGGAATTTGTACGTATATGAAAAGAGCAAAGAAGGTGCTGGTGATTCCTCATTCCCAATTATCAAAGATCAAACACAATTTTCTGTTGCTCATGCACGTTACAGTAAGAGTAATCCAGTAGCTAGATGGCATATATGCCAGGGTTCAATCAACAATATTTCCTTCTCGACTGATGGTGCATACTTGGCAACTGTTGGAAGAGATGGCTATTTACGAGTGTTTGATTACTCGAAGGAACAACTTATATGTGGTGGTAAAAGTTACTATGGTGCTCTGTTATGTTGTGCTTGGAGCATGGATTCAAAATATATTTTGACCGGAGGAGAAGATGATTTAGTTCAAGTTTGGAGCATGGAGGATCGCAAGGTTGTGGCGTGGGGTGAGGGACACAACTCCTGGGTCAGTGGAGTGGCTTTTGATTCATTTTGGACATCTCCAAATTCAAATGACAATACTGAAACTGTTATGTATCGGTTTGGCTCTGTTGGTCAGGATACGCAACTGCTTCTATGGGACCTGGAAATGGATGAGATTGTAGTACCATTGCGGCGTGCGCCTGGTGGATCCCCCACTTACAGTGCTGGAAACCAGTCATCTCACTGGGATAGTGTTGTCCCACTGGGTACGCTGCAACCTGCTCCAAGCATGCGTGATGTTCCAAAAATCTCACCTCTGGTTGCTCATCGCGTGCATACTGAACCTCTCTCGGGCTTGATATTTACCCAGGAATCTGTACTCACTGCCTGTCGGGAGGGACACGTTAAAATCTGGATGAGACCTGGGATTGCAGAGAGCCAACCAAGCAACTCTGAAACCTTGTTAGCTACTAGCTTGAAGGAGAAACCACTAATTTTAAGCAAGGTTAGCAATACTAGTTACAAACAATGA 1638 0.4499 MINAPNGMISTSSSATAQSPGLKTYFKTPEGRYKLHYEKTHPSALLHYAHGKTATQVTLAHLKEKPAPSTPTAPASSFSASSGVRSAAARLLGGGNGSRALSFVGGNGSSKNMGVNSRIGSIGASSSSSIMANSNFDGKGTYLIFNVGDAIFVSDLNSQDKDPIKSIHFSNSNPVCHAFDQEAKDGHDLLIGLSTGDVYSVSLRQQLQDVGKKLVGAQHYNKDGSVNNSRCTSVAWVPGGDGAFVVAHADGNLYVYEKSKEGAGDSSFPIIKDQTQFSVAHARYSKSNPVARWHICQGSINNISFSTDGAYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDSKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSFWTSPNSNDNTETVMYRFGSVGQDTQLLLWDLEMDEIVVPLRRAPGGSPTYSAGNQSSHWDSVVPLGTLQPAPSMRDVPKISPLVAHRVHTEPLSGLIFTQESVLTACREGHVKIWMRPGIAESQPSNSETLLATSLKEKPLILSKVSNTSYKQ 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2885 545 ProSiteProfiles Trp-Asp (WD) repeats profile. 335 376 IPR001680 GO:0005515
Dere01g2885 545 SUPERFAMILY WD40 repeat-like 149 507 IPR036322 GO:0005515
Dere01g2885 545 PANTHER WD REPEAT PROTEIN 11 522 - -
Dere01g2885 545 MobiDBLite consensus disorder prediction 1 23 - -
Dere01g2885 545 Gene3D - 11 515 IPR015943 GO:0005515
Dere01g2885 545 Pfam WD domain, G-beta repeat 342 367 IPR001680 GO:0005515
Dere01g2885 545 Pfam WD domain, G-beta repeat 297 325 IPR001680 GO:0005515
Dere01g2885 545 SMART WD40_4 471 508 IPR001680 GO:0005515
Dere01g2885 545 SMART WD40_4 328 367 IPR001680 GO:0005515
Dere01g2885 545 SMART WD40_4 286 325 IPR001680 GO:0005515
Dere01g2885 545 SMART WD40_4 211 257 IPR001680 GO:0005515
Dere01g2885 545 SMART WD40_4 370 422 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2885 Dere-ChrDere01 43623136 43628123 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2885 01 43623136 43628123 Dere01g2885 01 43623136 43628123 ECH