Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2848 ATGGAAGCTGCAAAGAATTTGTTTTGTTCATCTCCACCGTTTCCATTTAGAACTAACCACTGGAGCGGTCTTCCTTCATCTTCTTCAACTTCTTCTACTTCCGTTTTGATGTTTCATGAACAAGCCGTTCCTGCAGTTACCTCAAGGTCTGCTAGTTTTGTAGCTCAGCATTTTCCTACCTCAGTTCTTTTACAAGAGCAACGTGATGAGTACAGACCTATACAGCGCATCTATAAGGAAGAAAAGACATCCCAGGCAACATTAAATACGAGGCGGATCGATATGGCCTCAGTTCATGAAGACAATAACCTTGGCAATGCTGATCAGTTAGTGCACGACTTTAAGCAGCAATTGCAAATTTGGCCTTGTTTACGGAACTTGTTGACTTCCTTACCAACTGGGGGAATGGCAACATCTTCCTCTCTGCAGGCTGTTACCATTGATTCAGAAAAGCCTGCACATGATGAATATCATGATGCAGTTGCTCTTGCTAAGCAAGCCTTGTTGGCCTCAAAACAAGCAGCCTCGGTAGCTGAAGACTTGAAATCAATCAAAGCTGATGATGATGTTTTACTTCCTCTTGGTCTGGCCTCCACAAGTTTGGATGACTTTTCACTTGGAAAGAATAAAACTGTGAGGTCAACACGCCTTCTAGAGAGACAATCAAAGAAGAGAAGAAAATCAAGGTTAAAAGTTTTAGATGAAGAAAGCTATCCAACTAAAAAGGCTGGAGTAAAGGGAAGAATACATCTAGAAAAGAAGATAAATGAAGGGTTTGATCAAAATGATCCACTGCGCTTGTTCTTGTGGGGCCCTGAAACAAAGCAACTTTTGACTCTGGAAGAAGAATCTCAATTGATTGTTCAGCTACAGGACTTAATGAGATTGGAAAGTGTGAAGAGAAGGCTTCAATCTCAATTTGGGCGGGAACCAACTTTAGCTGAGTGGGCTGAAGGTGTGGGGCTTACCTGTCGTGCCCTGCAGTTACAGCTTCATTCTGGTAACAGCAGCAGAGACAAGCTTATATATGCAAATTTGCGATTGGTAGTTCACATTGCTAAACATTATCAGGGGCGTGGTCTCAGCTTTCAGGACTTATTGCAGGAGGGAAGTATGGGTCTAACGAAGAGCGTTGAAAAGTTTAAACCCCAGGCTGGTTGCCGTTTTGGTACTTATGCATACTGGTGGATAAGGCAAACAATAAGGAAGGCCATATTTCAACATTCCAGGACAATCCGTCTGCCGGAGAATATATACACCCTTTTGGGTAAGGTAATGGAGGCAAAGAAATTATACATTCAAGAAGGAAATCTTCGTCCTACCAAGGAAGAACTAGCAAGAAGGGTAGGAATTACAGTAGACAAGTTAGAAAAGTTGCTATTTGTTGCAAGAATTCCTCTTTCGATGCAACAAACTGTGTGGGCAGACCAGGATACCACTTTCCAGGAGGTTACTGCAGACACGGCAATTGAGAGCCCAGATATGAGTGTTGCTAAACAGCTGATGAGGCGGCATGTGCGAAACCTCTTAAATATTTTAAGCCCAAAAGAAAGGAGGATAATCCGGCTAAGATTTGGTATTGAGGACGGTGAACAGAAATCATTATCAGAGATTGGAAACACATTTGGTTTGTCTAAGGAAAGGGTTCGACAGTTGGAGAGCCGAGCATTGTACAAACTCAAGCAGTGCCTTGGCTGCCAGGGACTTGATGCATATGCAGACTTGCTTGTATAG 1734 0.4279 MEAAKNLFCSSPPFPFRTNHWSGLPSSSSTSSTSVLMFHEQAVPAVTSRSASFVAQHFPTSVLLQEQRDEYRPIQRIYKEEKTSQATLNTRRIDMASVHEDNNLGNADQLVHDFKQQLQIWPCLRNLLTSLPTGGMATSSSLQAVTIDSEKPAHDEYHDAVALAKQALLASKQAASVAEDLKSIKADDDVLLPLGLASTSLDDFSLGKNKTVRSTRLLERQSKKRRKSRLKVLDEESYPTKKAGVKGRIHLEKKINEGFDQNDPLRLFLWGPETKQLLTLEEESQLIVQLQDLMRLESVKRRLQSQFGREPTLAEWAEGVGLTCRALQLQLHSGNSSRDKLIYANLRLVVHIAKHYQGRGLSFQDLLQEGSMGLTKSVEKFKPQAGCRFGTYAYWWIRQTIRKAIFQHSRTIRLPENIYTLLGKVMEAKKLYIQEGNLRPTKEELARRVGITVDKLEKLLFVARIPLSMQQTVWADQDTTFQEVTADTAIESPDMSVAKQLMRRHVRNLLNILSPKERRIIRLRFGIEDGEQKSLSEIGNTFGLSKERVRQLESRALYKLKQCLGCQGLDAYADLLV 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2848 577 Pfam Sigma-70, region 4 509 562 IPR007630 GO:0003700|GO:0006352|GO:0006355
Dere01g2848 577 NCBIfam sigma-70 family RNA polymerase sigma factor 337 564 IPR014284 GO:0003700|GO:0006352|GO:0006355
Dere01g2848 577 PRINTS Major sigma-70 factor signature 389 397 IPR000943 GO:0003700|GO:0006352|GO:0006355
Dere01g2848 577 PRINTS Major sigma-70 factor signature 365 378 IPR000943 GO:0003700|GO:0006352|GO:0006355
Dere01g2848 577 PRINTS Major sigma-70 factor signature 549 560 IPR000943 GO:0003700|GO:0006352|GO:0006355
Dere01g2848 577 PRINTS Major sigma-70 factor signature 513 525 IPR000943 GO:0003700|GO:0006352|GO:0006355
Dere01g2848 577 PRINTS Major sigma-70 factor signature 534 549 IPR000943 GO:0003700|GO:0006352|GO:0006355
Dere01g2848 577 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 414 487 IPR013324 -
Dere01g2848 577 Pfam Sigma-70 region 3 422 496 IPR007624 GO:0003700|GO:0006352|GO:0006355
Dere01g2848 577 Pfam Sigma-70 region 2 342 410 IPR007627 GO:0003700|GO:0006352|GO:0006355
Dere01g2848 577 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 262 411 IPR013325 GO:0003700|GO:0006352|GO:0006355
Dere01g2848 577 ProSitePatterns Sigma-70 factors family signature 2. 534 560 IPR000943 GO:0003700|GO:0006352|GO:0006355
Dere01g2848 577 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 155 573 - -
Dere01g2848 577 Gene3D - 492 563 IPR036388 -
Dere01g2848 577 PIRSF Sigma_factor_SigC 1 577 IPR016262 -
Dere01g2848 577 Gene3D - 208 410 - -
Dere01g2848 577 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 474 572 IPR013324 -
Dere01g2848 577 Gene3D - 414 491 IPR036388 -
Dere01g2848 577 CDD Sigma70_r4 503 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2848 Dere-ChrDere01 43294939 43299673 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g1042 02 9858859 9871456 Dere01g2848 01 43294939 43299673 CCT
Dere01g2848 01 43294939 43299673 Dere01g2848 01 43294939 43299673 ECH