Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2750 ATGACGGTTAACGATTCGGTTATGGCTGAGCATTTGGCATCGATTTTCGGAACGGAGAAGGACAGGGTGAACTGTCCCTTCTACTTCAAGATCGGAGCTTGCAGGCATGGCGACCGCTGCTCCAGACTTCACACTAAGCCCACCATTAGCCCTACTCTTCTTCTCTCTAACATGTACCAGAGGCCTGATATGATCACCCCTGTCGTTGACCCTAACCAAGGACAAGCACTTGACCCCGACAAGGTCCAAGATCACTTCGAGGATTTCTATGAAGATCTATTTGAGGAGTTGAGCAAGTATGGAGAAATTCAGAGCTTGAATATCTGTGATAATTTGGCTGATCACATGGTTGGTAACGTATATGTTCAGTTTAAAGAGGAAGACCATGCTGCTAATGCGCTAATGAATCTGACTGGTAGATTTTATTCAGGGCGACCCATCATTGTTGACTTCTCTCCTGTGACGGATTTTCGAGAAGCTACTTGTAGGCAGTATGAGGAAAATGTATGCAATCGAGGTGGCTATTGCAATTTCATGCACCTGAAGAAGATTAGCAGGGAGTTGAGAAAGCGATTATTTGGGAGAAATAAGCGATGGCATGGCCAGGGAGGAAGCAGAAGCCGGAGCCCTCCCAGGCATCGTCACTATGATGACCGTCCGCATGCTGGACGTGGTTCTGGTAGAAGAGATGTTGACAGACATCACGGCCACCAAGGTAGGAGCAGGTTGCCCAGAAGCCGTAGTCCTCGAAGAAGAACAAATCGAAGTAGAAGTCCAGTGGGAAGAGATAGGAGTCCTGTTAGAGAAAGTAGTGCAGAACGAAGAGCTAAGATAGAGCAATGGAACAGGGAGAGGGAACTGGAAGAATCTGGCAACAAGAACAGTAGAAATGACAATGATGATGAACAACAGGGTGTTGAGCAAAATGGAGGTGAATTTGATAACCACCGGATATAG 957 0.4681 MTVNDSVMAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLLLSNMYQRPDMITPVVDPNQGQALDPDKVQDHFEDFYEDLFEELSKYGEIQSLNICDNLADHMVGNVYVQFKEEDHAANALMNLTGRFYSGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRKRLFGRNKRWHGQGGSRSRSPPRHRHYDDRPHAGRGSGRRDVDRHHGHQGRSRLPRSRSPRRRTNRSRSPVGRDRSPVRESSAERRAKIEQWNRERELEESGNKNSRNDNDDEQQGVEQNGGEFDNHRI 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2750 318 ProSiteProfiles Zinc finger C3H1-type profile. 19 47 IPR000571 GO:0046872
Dere01g2750 318 MobiDBLite consensus disorder prediction 256 303 - -
Dere01g2750 318 MobiDBLite consensus disorder prediction 195 318 - -
Dere01g2750 318 SMART rrm2_1 75 150 IPR003954 GO:0003676
Dere01g2750 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 147 IPR000504 GO:0003723
Dere01g2750 318 FunFam Splicing factor U2AF small subunit 52 153 - -
Dere01g2750 318 MobiDBLite consensus disorder prediction 210 237 - -
Dere01g2750 318 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 21 44 IPR000571 GO:0046872
Dere01g2750 318 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 158 181 IPR000571 GO:0046872
Dere01g2750 318 MobiDBLite consensus disorder prediction 238 255 - -
Dere01g2750 318 CDD RRM_U2AF35B 51 153 - -
Dere01g2750 318 SMART c3hfinal6 20 46 IPR000571 GO:0046872
Dere01g2750 318 SMART c3hfinal6 156 182 IPR000571 GO:0046872
Dere01g2750 318 SUPERFAMILY RNA-binding domain, RBD 85 157 IPR035979 GO:0003676
Dere01g2750 318 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 8 288 IPR009145 GO:0000398|GO:0003723|GO:0089701
Dere01g2750 318 SMART rrm1_1 52 150 IPR000504 GO:0003723
Dere01g2750 318 PRINTS U2 auxiliary factor small subunit signature 138 162 IPR009145 GO:0000398|GO:0003723|GO:0089701
Dere01g2750 318 PRINTS U2 auxiliary factor small subunit signature 83 98 IPR009145 GO:0000398|GO:0003723|GO:0089701
Dere01g2750 318 PRINTS U2 auxiliary factor small subunit signature 111 133 IPR009145 GO:0000398|GO:0003723|GO:0089701
Dere01g2750 318 PRINTS U2 auxiliary factor small subunit signature 44 64 IPR009145 GO:0000398|GO:0003723|GO:0089701
Dere01g2750 318 PRINTS U2 auxiliary factor small subunit signature 173 185 IPR009145 GO:0000398|GO:0003723|GO:0089701
Dere01g2750 318 PRINTS U2 auxiliary factor small subunit signature 25 44 IPR009145 GO:0000398|GO:0003723|GO:0089701
Dere01g2750 318 Gene3D - 50 153 IPR012677 -
Dere01g2750 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 154 IPR000504 GO:0003723
Dere01g2750 318 ProSiteProfiles Zinc finger C3H1-type profile. 156 183 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2750 Dere-ChrDere01 42354763 42360531 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2750 01 42354763 42360531 Dere01g2750 01 42354763 42360531 ECH