Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2664 ATGGAAAACAGTGCAGGAAGTGGGAGAGAAAGGGAATTAATCGGAGATAATGGTTTCGTGAAAGTGCCACAACCTTCTATTAGCAGTAGTGACTCTGGTGGGAATATTGATCAATCACATAAGAGAGGCGAAGGGAAAGATGATTTATCTTATGCCAACATCCTACGTTCAAGGAACAAGTTTGTTGATGCTCTTGCTTTATATGAGCGCATCCTCGAGAAAGACCATGGAAATGTAGAAGCTCTCATTGGAAAAGGGATATGTCTTCAGATGCAGAACATGGCAAGGCTTGCTTTTGACAGTTTTGCCGAGGCTATCAAGTTGGATCCCCAGAATGCTTGTGCCCTCACGCATTGCGGTATTTTGTACAAAGAAGAAGGTCGCTTAGTAGAGGCAGCTGAGTCGTATCAGAAGGCTTTACGAGTGGATCCTTCATACAAAGTGGCTTCTGAATGCCTCGCCATTGTTTTAACAGACATTGGTACAAACATAAAGCTTGCAGGAAATACTCAGGAGGGAATTCAAAAGTATTATGAAGCTCTTAAAATAGATCCACACTATGCTCCAGCATATTATAACCTTGGTGTTGTCTATTCTGAAATGATGCAATACGATATGGCCCTTAGTTTCTATGAGAAGGCTGCATCAGAGAGGCCAACGTATGCTGAAGCATATTGCAATATGGGCGTAATATATAAAAATCGTGGTGATTTGGAAGCAGCTATTGTTTGCTATGAGAGGTGCTTAGCTGTTTCGCCTAACTTTGAGATTGCAAAGAATAATATGGCTATAGCCTTGACTGATTTGGGAACAAAGGTTAAATTGGAAGGGGACATCAATCAAGGTGTGGCCTATTACAAGAAAGCTTTGTATTATAATTGGCATTATGCTGATGCTATGTATAATCTTGGGGTTGCTTATGGTGAGATGCTTAAGTTTGACATGGCTATTGTATTTTATGAACTTGCTTTCCACTTCAATCCTCATTGTGCGGAAGCTTGTAACAATCTAGGGGTTATATATAAAGATAAAGACAACCTTGATAAAGCTGTCGAGTGTTACCAGCTTGCTTTGTCAATCAAACCTAATTTTTCACAATCATTGAATAATCTTGGTGTTGTCTATACTGTCCAGGGTAAAATGGATGCTGCTGCAAGTATGATTGAGAAAGCTATCATTGCAAACCCAACATATGCAGAAGCATACAATAACCTAGGTGTCCTTTATAGGGATGCTGGTGATATCACTCTGGCAGTTAATGCTTATGAGCAATGTCTTAAGATAGATCCTGACTCTCGAAATGCTGGCCAGAACCGCTTGCTTGCAATGAATTACATAGATGAAGGACATGATGATAAACTTTTTGAAGCTCACAGGGACTGGGGTAGGCGCTTCATGAAATTATATTCACAATACACAACATGGGACAACCCTAAAGATCCTGACCGACCTCTTGTCATAGGATATGTATCTCCTGATTATTTTACCCATTCTGTGTCATATTTCATAGAAGCACCCCTTGTCTATCATGACTACACCAATTATAAAGTGATTGTTTATTCAGCAGTTGTCAAGGCAGATGCAAAAACCATTAAATTTCGGGAGAAAGTTCTACAAAAGGGTGGGATCTGGAGAGATATATATGGGATTGATGAAAAGAAGGTTGCCAACATGGTTAGAGAAGACCAGGTTGACATTCTGGTAGAACTTACTGGTCATACTGCAAACAATAAGTTGGGAATGATGGCATGTCGACCTGCACCGGTTCAGGTTACTTGGATTGGTTATCCTAATACAACTGGCTTACCTACAATTGATTATAGACTAACTGATTCTCTGGCAGACCCTCCTGAAACAAAGCAGAAGCATGTTGAGGAGTTAGTTCGATTACCTGAATGCTTCCTTTGTTATACACCTTCCCTTGAGGCTGGGCCTATTTGTCCTACTCCTGCCCTTTCCAATGGCTTCATTACATTTGGTAGCTTTAACAATCTTGCCAAGATTACACCTAAAGTATTGCAAGTTTGGGCAAGGATATTACGTGCAGTTCCAAATTCTCGCCTTGTGGTAAAATGTAAACCATTTTGTTGTGATAGTGTAAGACAGAGATTTCTTGCAACATTGGAGCAGTTAGGTTTGGAGCCACTGCGTGTTGATCTTCTGCCCCTAATTCTTCTCAACCATGATCATATGCAAGCATATTCTCTGATGGACATCAGTTTGGACACATTTCCTTATGCTGGAACAACTACAACATGTGAATCTTTATACATGGGAGTTCCATGTGTCACTATGGCTGGTTCTGTACATGCACACAATGTTGGTGTTAGCCTTCTTAGCAAAGTTGGTCTGGGGCGTTTGATTGCCAGAAATGAAGATGAATACGTCCAATTGGCTCTGCAGTTGGCCACTGACATTTCAGCACTACAAAATCTGAGGATGAGTCTGCGAGAACTCATGTCCAAGTCTCCTCTTTGTGATGGAGCAAATTTTATTCGTGGTCTAGAATCAACATTTAGGAACATGTGGCGCAGATATTGCAAAGGAGATGTTCCATCTTTAAAGCGCATGGAATTGTTGCAGCAGTCGGCCACAATTAATGACCCATCTAGTAAGACTTCTGAGCCGACAAGGATAGCAAACTCAAGGGAGGAAAGTCCAGGATCTGTCAAGACCAATGGATTAAATTCAACGCAACCATCTAAGCTCAATAACCGCAGTTGCGAAGAAAATGGCAGGTCATTGAATCACTCTAGTATACAAGGAAAGTTGGGTTCTAGTTAA 2784 0.4091 MENSAGSGRERELIGDNGFVKVPQPSISSSDSGGNIDQSHKRGEGKDDLSYANILRSRNKFVDALALYERILEKDHGNVEALIGKGICLQMQNMARLAFDSFAEAIKLDPQNACALTHCGILYKEEGRLVEAAESYQKALRVDPSYKVASECLAIVLTDIGTNIKLAGNTQEGIQKYYEALKIDPHYAPAYYNLGVVYSEMMQYDMALSFYEKAASERPTYAEAYCNMGVIYKNRGDLEAAIVCYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDKDNLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGDITLAVNAYEQCLKIDPDSRNAGQNRLLAMNYIDEGHDDKLFEAHRDWGRRFMKLYSQYTTWDNPKDPDRPLVIGYVSPDYFTHSVSYFIEAPLVYHDYTNYKVIVYSAVVKADAKTIKFREKVLQKGGIWRDIYGIDEKKVANMVREDQVDILVELTGHTANNKLGMMACRPAPVQVTWIGYPNTTGLPTIDYRLTDSLADPPETKQKHVEELVRLPECFLCYTPSLEAGPICPTPALSNGFITFGSFNNLAKITPKVLQVWARILRAVPNSRLVVKCKPFCCDSVRQRFLATLEQLGLEPLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLSKVGLGRLIARNEDEYVQLALQLATDISALQNLRMSLRELMSKSPLCDGANFIRGLESTFRNMWRRYCKGDVPSLKRMELLQQSATINDPSSKTSEPTRIANSREESPGSVKTNGLNSTQPSKLNNRSCEENGRSLNHSSIQGKLGSS 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2664 927 ProSiteProfiles TPR repeat profile. 399 432 IPR019734 GO:0005515
Dere01g2664 927 ProSiteProfiles TPR repeat region circular profile. 188 219 - -
Dere01g2664 927 Gene3D Tetratricopeptide repeat domain 297 369 IPR011990 GO:0005515
Dere01g2664 927 Gene3D Tetratricopeptide repeat domain 158 223 IPR011990 GO:0005515
Dere01g2664 927 ProSiteProfiles TPR repeat profile. 188 221 IPR019734 GO:0005515
Dere01g2664 927 ProSiteProfiles TPR repeat region circular profile. 399 431 - -
Dere01g2664 927 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
Dere01g2664 927 Gene3D Tetratricopeptide repeat domain 224 293 IPR011990 GO:0005515
Dere01g2664 927 MobiDBLite consensus disorder prediction 22 36 - -
Dere01g2664 927 Gene3D Glycogen Phosphorylase B; 641 826 - -
Dere01g2664 927 ProSiteProfiles TPR repeat profile. 331 364 IPR019734 GO:0005515
Dere01g2664 927 SUPERFAMILY TPR-like 264 798 IPR011990 GO:0005515
Dere01g2664 927 Gene3D - 470 640 - -
Dere01g2664 927 ProSiteProfiles TPR repeat region circular profile. 331 363 - -
Dere01g2664 927 ProSiteProfiles TPR repeat profile. 113 146 IPR019734 GO:0005515
Dere01g2664 927 MobiDBLite consensus disorder prediction 862 927 - -
Dere01g2664 927 Pfam Tetratricopeptide repeat 366 430 - -
Dere01g2664 927 ProSiteProfiles TPR repeat profile. 297 330 IPR019734 GO:0005515
Dere01g2664 927 Pfam Tetratricopeptide repeat 331 364 IPR001440 GO:0005515
Dere01g2664 927 Pfam Tetratricopeptide repeat 188 221 IPR001440 GO:0005515
Dere01g2664 927 Pfam Tetratricopeptide repeat 222 255 IPR001440 GO:0005515
Dere01g2664 927 SMART sel1 188 219 IPR006597 -
Dere01g2664 927 SMART sel1 222 253 IPR006597 -
Dere01g2664 927 SMART sel1 399 430 IPR006597 -
Dere01g2664 927 SMART sel1 331 362 IPR006597 -
Dere01g2664 927 SMART sel1 297 328 IPR006597 -
Dere01g2664 927 SMART tpr_5 154 187 IPR019734 GO:0005515
Dere01g2664 927 SMART tpr_5 45 78 IPR019734 GO:0005515
Dere01g2664 927 SMART tpr_5 263 296 IPR019734 GO:0005515
Dere01g2664 927 SMART tpr_5 222 255 IPR019734 GO:0005515
Dere01g2664 927 SMART tpr_5 399 432 IPR019734 GO:0005515
Dere01g2664 927 SMART tpr_5 79 112 IPR019734 GO:0005515
Dere01g2664 927 SMART tpr_5 113 146 IPR019734 GO:0005515
Dere01g2664 927 SMART tpr_5 365 398 IPR019734 GO:0005515
Dere01g2664 927 SMART tpr_5 331 364 IPR019734 GO:0005515
Dere01g2664 927 SMART tpr_5 297 330 IPR019734 GO:0005515
Dere01g2664 927 SMART tpr_5 188 221 IPR019734 GO:0005515
Dere01g2664 927 FunFam probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY 263 461 - -
Dere01g2664 927 Pfam Tetratricopeptide repeat 120 145 IPR019734 GO:0005515
Dere01g2664 927 PANTHER UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED 38 867 - -
Dere01g2664 927 Gene3D Tetratricopeptide repeat domain 46 157 IPR011990 GO:0005515
Dere01g2664 927 ProSiteProfiles TPR repeat profile. 154 187 IPR019734 GO:0005515
Dere01g2664 927 SUPERFAMILY TPR-like 47 271 IPR011990 GO:0005515
Dere01g2664 927 Gene3D Tetratricopeptide repeat domain 370 460 IPR011990 GO:0005515
Dere01g2664 927 ProSiteProfiles TPR repeat region circular profile. 222 254 - -
Dere01g2664 927 ProSiteProfiles TPR repeat profile. 222 255 IPR019734 GO:0005515
Dere01g2664 927 MobiDBLite consensus disorder prediction 1 45 - -
Dere01g2664 927 Pfam Glycosyl transferase family 41 652 832 IPR029489 -
Dere01g2664 927 Pfam Glycosyl transferase family 41 477 635 IPR029489 -
Dere01g2664 927 ProSiteProfiles TPR repeat profile. 365 398 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2664 Dere-ChrDere01 41480115 41493912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2664 207 913 Glycosyltransferase AT3G11540 63.225 0.0 902
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2664 01 41480115 41493912 Dere01g2664 01 41480115 41493912 ECH