Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2569 ATGCTTGAACTGCCCTCAGCGTTTTTCCTTAGCGAGTTTCTTCCTCTAGAATCCATTGACTTCTCCCTCCAACATTCGCTCCCTGGTTCAGCGGAACTCGAACGAGCTCTCGAGTTTCAATTTATCATTGTTTGTGTTTACTGTTTGGGACTCTACTTTGTTGATGGAGCTCTGTTTTGGATGATCGGGTATCATATATTGTTCGTGCAGGAGTTGGTGGTTTGTGCAAAACTACAGATGGATAATCAACAAAGTAGTGATTTCGTCAAACAGAAATTCACATGGACTATTAAAAACTTCTCTAAGTTAAACCGTAAGAAGCTGTACTCCGAGACCTTCATTGTGGGCCGTCATCCATGGAGGATTCTTATATTTCCAAAAGGCAATGATGCGGACTACTTGTCCATATATTTGGATGCTGCGGATTTTGCAAGTTTACCTTACAGCTGTTCCAGTTCCAGATGTGCAACTTTCAGTTTGGCTGTAATTAATCAAGTTAATAGCAAGTCAACAATCAAGAAAGATACTCAACATGAGTTCAATTCAAGAGAGAATGACTGGGGTTTCACAACATTTATGCTTTTAAGTGAACTTAATGATCCTGTGAAGGGTTATGTTGTAAATGATACATGTATCATTGATGCTGAGGTTTCTGTACCTAAATCTGGAAATGAGGATCAAGTAGATCTAGCAGCAGGCTTAACATCCGTGAAATCTGAAGATCGTGGTGGACAAATGGAAGTGGAACCCCCAAAGCAAGAAGGTCGAGGATGTAATGTGAATACTGTTCCCCCACTTCCTGCACAAGTTTCCATTGAGCCTGTGGAGGAGACTGTTAATCCTTCCTTGCCTAAAGAGGTGTCCTCAACCTCAATTGGTGAGCTTATGGATTTCAGGGGTCTTGGGCAAATCGAAAAAGTTTTTGTTCCTCTACTGGAGGAAGTGTGTTCAAAGCATCCATCACTCATTGAATGTCAACAGAAGAGAAGTCGTCGGTTTATTGAATGGGCATTCACAGCTTTGGGCCGAGTTCTACATTTTCTTAAGACTAAAAGGGTGAAGGATATGAATGATGAGGCCTGTAAGCATCTTCAAGTCTTATGGGAGGAACTTGAAACATTTAGATTTGATTTGACTTGGCTGGAGCCTCATGTTCAATCCGCCTTGAACATGAAAAACCATATGGAGAGGGCAGTGCAGTTGAAAAAATTGAAGGAGAACGTGAGTGCTTTGGAGATGGAAATGAAGGGGCTTAAAGCAAAGCTTGCTACTGCAGAGGTAGATCTTGAAATAGCGAGAAGAGACTTGGCGCAAGCAGAAGGGTTCGAAGAGAGGGATCTGGATGCTGAACTAGGATATGGGAGACCATAG 1371 0.4209 MLELPSAFFLSEFLPLESIDFSLQHSLPGSAELERALEFQFIIVCVYCLGLYFVDGALFWMIGYHILFVQELVVCAKLQMDNQQSSDFVKQKFTWTIKNFSKLNRKKLYSETFIVGRHPWRILIFPKGNDADYLSIYLDAADFASLPYSCSSSRCATFSLAVINQVNSKSTIKKDTQHEFNSRENDWGFTTFMLLSELNDPVKGYVVNDTCIIDAEVSVPKSGNEDQVDLAAGLTSVKSEDRGGQMEVEPPKQEGRGCNVNTVPPLPAQVSIEPVEETVNPSLPKEVSSTSIGELMDFRGLGQIEKVFVPLLEEVCSKHPSLIECQQKRSRRFIEWAFTALGRVLHFLKTKRVKDMNDEACKHLQVLWEELETFRFDLTWLEPHVQSALNMKNHMERAVQLKKLKENVSALEMEMKGLKAKLATAEVDLEIARRDLAQAEGFEERDLDAELGYGRP 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2569 456 CDD MATH 92 217 IPR002083 GO:0005515
Dere01g2569 456 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 89 230 IPR008974 GO:0005515
Dere01g2569 456 MobiDBLite consensus disorder prediction 239 263 - -
Dere01g2569 456 ProSiteProfiles MATH/TRAF domain profile. 90 217 IPR002083 GO:0005515
Dere01g2569 456 SUPERFAMILY TRAF domain-like 88 221 - -
Dere01g2569 456 FunFam Ubiquitin carboxyl-terminal hydrolase 13 88 228 - -
Dere01g2569 456 SMART math_3 92 198 IPR002083 GO:0005515
Dere01g2569 456 Coils Coil 401 435 - -
Dere01g2569 456 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 84 430 - -
Dere01g2569 456 Pfam MATH domain 97 219 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2569 Dere-ChrDere01 40533236 40535992 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2569 01 40533236 40535992 Dere01g2569 01 40533236 40535992 ECH