Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2461 ATGAGCCTCTCATTGTTCGCGCTCGATTCCCTCACTGTCTCTCCGCCTCGCAGAGCCTGCGAATTCCACCGTAGGCCTGTTCTTTCTCGCCGGAGCGTCGTCCTTTGCTCTGCGAAGCCCGTGGTGCCCTCTCCTTCCAAGCTGAGCGCGGCTGATTCTTCAACCGTTGATGAGTTGAGTCGAATCGGGTCGCTCAGTCAGGTGTCTGGTGTTCTGGGTTGCCAATGGGGCGATGAAGGCAAAGGGAAGCTCGTTGATATTCTAGCCCAGCACTTTGACATCGTTGCTCGTTGCCAGGGTGGAGCTAATGCTGGGCATACCATTTATAATGCAGAGGGAAAAAAGTTTGCTCTTCATCTTGTTCCTTCAGGTATCCTCAATGAGGATACACTCTGTGTTATTGGCAATGGGGTTGTAGTGCATCTGCCGGGGCTTTTCAAAGAAATTGATGGCCTAGAATCCAATGGGGTCTCTTGCAAGGGAAGGATACTGATATCTGATCGCGCCCACTTGTTGTTTGATTTTCACCAAGTAGTGGATGGGCTAAGAGAGGCTGAGCTTGCTAAATCTTTTATTGGAACTACGAGGAGAGGCATTGGACCTTGCTATTCCAGCAAGGTTAACCGTAATGGCATTAGAGTAAGTGATTTGAGGCACATGGATACTTTTCCTCATAAGCTTGATCTTTTGTTATCAGATGCGGCATTAAGATTCAAAGATTTTAACTATGGTCCGGACATGCTCAGGGAAGAAGTTGAAAGGTACAAGAGATACGCTGAGAGATTGGAACCCTTTATTGCTGATACTGTACATGTCATGAATGAAGCTATAACACAAAAGAAGAAGATTCTGGTTGAAGGAGGTCAAGCAACAATGTTGGACATTGATTTTGGAACTTATCCCTTTGTAACTTCATCCAGTCCATCAGCAGGTGGGATTTGCACTGGTCTAGGTATTGCTCCAAGAGTTGTTGGTGATCTAATTGGTGTGGTTAAAGCATACACTACAAGGGTTGGCTCTGGTCCTTTTCCCACTGAAAATTTGGGTCAAGAGGGTGATCTTCTTAGATTTGCTGGACAGGAGTTTGGCACAACTACTGGTCGTCCTCGACGCTGTGGTTGGCTTGATATAGTAGCATTAAAATACTGTTGTCAGATCAATGGGTTTTCATCACTCAATCTCACTAAGCTGGATGTTTTATCGGATTTTGCTGAAATTCAGTTGGGTGTGTCTTATAAACATCCTGATGGTACACCAATCAAATCATTTCCTTCAGACCTCCGTCTTCTGGACCAGTTGAAGGTGGAGTATGAAGTACTTCCAGGATGGAAGTGTGATATTTCTTCCATCAGAAATTTTTCTGAGCTTCCAAGAGCTGCACGCCATTATATGGAAAGGATAGAAGAACTTGTTGGTGTGCCAATTCACTACATTGGTGTTGGGCCCGGACGTGATGCCCTCATTTTTAAATAA 1473 0.4535 MSLSLFALDSLTVSPPRRACEFHRRPVLSRRSVVLCSAKPVVPSPSKLSAADSSTVDELSRIGSLSQVSGVLGCQWGDEGKGKLVDILAQHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDTLCVIGNGVVVHLPGLFKEIDGLESNGVSCKGRILISDRAHLLFDFHQVVDGLREAELAKSFIGTTRRGIGPCYSSKVNRNGIRVSDLRHMDTFPHKLDLLLSDAALRFKDFNYGPDMLREEVERYKRYAERLEPFIADTVHVMNEAITQKKKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTENLGQEGDLLRFAGQEFGTTTGRPRRCGWLDIVALKYCCQINGFSSLNLTKLDVLSDFAEIQLGVSYKHPDGTPIKSFPSDLRLLDQLKVEYEVLPGWKCDISSIRNFSELPRAARHYMERIEELVGVPIHYIGVGPGRDALIFK 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2461 490 Hamap Adenylosuccinate synthetase [purA]. 1 490 IPR001114 GO:0000166|GO:0004019|GO:0006164
Dere01g2461 490 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 488 IPR027417 -
Dere01g2461 490 Pfam Adenylosuccinate synthetase 71 488 IPR001114 GO:0000166|GO:0004019|GO:0006164
Dere01g2461 490 Gene3D Adenylosuccinate Synthetase, subunit A, domain 3 331 490 IPR042111 -
Dere01g2461 490 PANTHER ADENYLOSUCCINATE SYNTHETASE 55 489 IPR001114 GO:0000166|GO:0004019|GO:0006164
Dere01g2461 490 Gene3D Adenylosuccinate Synthetase, subunit A, domain 2 167 265 IPR042110 -
Dere01g2461 490 ProSitePatterns Adenylosuccinate synthetase GTP-binding site. 75 82 IPR018220 GO:0005525
Dere01g2461 490 SMART adenylsucc_synt 68 489 IPR001114 GO:0000166|GO:0004019|GO:0006164
Dere01g2461 490 NCBIfam adenylosuccinate synthase 71 488 IPR001114 GO:0000166|GO:0004019|GO:0006164
Dere01g2461 490 FunFam Adenylosuccinate synthetase 331 490 - -
Dere01g2461 490 ProSitePatterns Adenylosuccinate synthetase active site. 198 209 IPR033128 -
Dere01g2461 490 Gene3D Adenylosuccinate Synthetase, subunit A, domain 1 71 330 IPR042109 -
Dere01g2461 490 FunFam Adenylosuccinate synthetase, chloroplastic 167 265 - -
Dere01g2461 490 CDD AdSS 67 489 IPR001114 GO:0000166|GO:0004019|GO:0006164
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2461 Dere-ChrDere01 39156941 39159215 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2461 01 39156941 39159215 Dere01g2461 01 39156941 39159215 ECH