Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2391 ATGTGCATTTCATATGCTCCAAATCTACTCAGAATATGTGCTACATCTGCCGCGTCCCTACGTCCCACTTTTCTCTCTCTTTTGTACTCCTCTCTTCTTCCGACCTTTCCACTTTATACAATGAAGCTTATCAGTATCAACCCTAAAAACCTCAGACTCAGCCCCAAACGCCTCTTTCGATCCAAGAAGGAACGCTCTGTCGTCTCCAGATCCGACCCTTCATCCTTCAGCTCCGGCACATCGTCTTCTTCCTCTGATGAGTCGGCCCACAAGCCCGCACCCGGCGCCGCCGGTTCCAGGACCCCCACCAGCGTCTTGCCGGAGGTTTCCGGGGACTGGTCCGATTTCTCGGCTGAAATTCAGTCCGATTTGGCTCAAGCGTTGAAGCTCATCGACCGAGATGATGACGGGATCATCTCGCGACAAGAGCTTGAGGCCTTGCTGACCCGGCTCGGAGCCCACCCGCCCAGCCAGGAGGAGGTGATGATGATGATCAGCGACGTGGATCCCGAAGGGCGAGGGTGCATCAGCGTCGAGGCGCTGATGAACCGGGTCGGCTCGGTTTGTGCTCCGGTACCCGACTCTGATGACTTCAGAGAGGCGTTCGAGGTCTTCGACGCCGATCACGACGGGAAAATCTCGGCGGAGGAGCTGTTAAGGGTTTTCAAGGCTATTGGGGACGAGCGGTGCACGTTAGAGGAATGCCGGCGTATGATAGCTGGCGTTGATAGGAACGGGGATGGCTTTGTGTGTTTCGACGAATTTTCTCGAATGATGGAGCTGCAGAGATGA 792 0.5543 MCISYAPNLLRICATSAASLRPTFLSLLYSSLLPTFPLYTMKLISINPKNLRLSPKRLFRSKKERSVVSRSDPSSFSSGTSSSSSDESAHKPAPGAAGSRTPTSVLPEVSGDWSDFSAEIQSDLAQALKLIDRDDDGIISRQELEALLTRLGAHPPSQEEVMMMISDVDPEGRGCISVEALMNRVGSVCAPVPDSDDFREAFEVFDADHDGKISAEELLRVFKAIGDERCTLEECRRMIAGVDRNGDGFVCFDEFSRMMELQR 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2391 263 ProSiteProfiles EF-hand calcium-binding domain profile. 230 263 IPR002048 GO:0005509
Dere01g2391 263 CDD EFh 197 259 IPR002048 GO:0005509
Dere01g2391 263 MobiDBLite consensus disorder prediction 64 104 - -
Dere01g2391 263 FunFam calmodulin-like protein 3 193 263 - -
Dere01g2391 263 Gene3D - 185 263 - -
Dere01g2391 263 SMART efh_1 160 188 IPR002048 GO:0005509
Dere01g2391 263 SMART efh_1 234 262 IPR002048 GO:0005509
Dere01g2391 263 SMART efh_1 123 151 IPR002048 GO:0005509
Dere01g2391 263 SMART efh_1 197 225 IPR002048 GO:0005509
Dere01g2391 263 Pfam EF-hand domain pair 197 259 IPR002048 GO:0005509
Dere01g2391 263 ProSiteProfiles EF-hand calcium-binding domain profile. 193 228 IPR002048 GO:0005509
Dere01g2391 263 MobiDBLite consensus disorder prediction 70 89 - -
Dere01g2391 263 ProSitePatterns EF-hand calcium-binding domain. 206 218 IPR018247 -
Dere01g2391 263 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 197 260 - -
Dere01g2391 263 Gene3D - 98 184 - -
Dere01g2391 263 SUPERFAMILY EF-hand 110 259 IPR011992 -
Dere01g2391 263 Pfam EF hand 126 147 IPR002048 GO:0005509
Dere01g2391 263 ProSitePatterns EF-hand calcium-binding domain. 243 255 IPR018247 -
Dere01g2391 263 ProSitePatterns EF-hand calcium-binding domain. 132 144 IPR018247 -
Dere01g2391 263 ProSiteProfiles EF-hand calcium-binding domain profile. 119 154 IPR002048 GO:0005509
Dere01g2391 263 CDD EFh 123 179 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2391 Dere-ChrDere01 38267725 38270423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2391 52 263 EF-hand Containing Proteins AT3G10190 52.830 5.22e-64 197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2391 01 38267725 38270423 Dere01g2391 01 38267725 38270423 ECH