Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2359 ATGGATGGAGATGGAAATGGGCATGAGGCTGAGGGTGAGGTGCGAAGAGAGGCAGTGGGTAGGTGCCTCAGCGACTATGTGGACGAAGGCAGCACCGAGAGCCACAGATACTACCTTTCGCGAAGGACTGTGCTTGAGATGCTCAGAGACAGAGGCTATTCTATTCCCTCTTCTGAAATCGAACTCTCTCTCGCTGATTTTCGAGTCATTCATAGCCAAAGCCCTGACATTGAACGCCTCCGCTTCTCCGCCACTCATGCCTCTGACCCTTCCAAGAGGATTTTGGTCACTTTCTGTTGGCCTGGTGTTGTAAAAGTTAATGTGATCCGGAGCCTTGCAGCTCAAATTTTTAACAAAGACACTTTAACAGGGATGATTTTGATAGTGCAGAATCAAGTTACTAGCCAGGCCTTGAAAGCTCTAGATCTTTTCTCATTCAAGGTTGAAATATTCCAGATCACCAATTTACTTGTTAATATTACAAAGCATGTCTTGAAGCCAAAGCATCAGGTGCTAACTGATAGGCAGAAACAAAATCTTCTGAAGAAATACAATTTAGAAGAGAAGCAGCTTCCCCGCATGCTACAGAAAGATGCAATTGCACAATACTACGGACTTGAGAGGGGCCAAGTGGTTAAAGTTACTTATGGTGGTGATATCACCCAGATGCATGTCACATACCGATGTGTTTGTTATTGGAAGCTAGGAAAAATCTTGCGGAAATCTCATGGTTTCAATTCGTGTTTGAGCTTTGATCCGGAATTGAAGCGAAGAAGATCAAAGATGAACGAACAAGATCCTGTGCTAACAGAACCAAAGAGTGGCTCCGACGCGTCGCGGATCGGAGAAGTTAAGGAGTGGCTTGCCAAGACATTCGAAGCCGCCGGCAAACCTGTCCCTGAATTTGAATATACTCCTCGAAGTGTAGCTCATTTGTACAATTTGCTTACCCTCTCCAAGGCCAAAGATGAAGCTGCCCGACTCGTTGCTCGTGACTTCCGCCAAAAGGCGGCAGAGTACCGATCCCAAGCTGCTAGGATTAGAGAGATATTGGAGAATGTGGGATTGGCCCAAGAGAGTTTGCCTTCAAATGTGGTTGCATCAACCCAGGTCCTTGCAAATGTGGCTAATTTGTTGAATATAAGAGACACTGAATTAAGTAGCTTTCTTGTAGCATTGGCTGATATTTCCTTGAGGAAGACTGGTGTGGAGGAGAAGAGGTCTAAAGTACTGAAGGAGTCCAAGATTCTTCTTGATTTCACTAGAAAAGCTATAGCCAGGCTAACTTACCTAAAGAGAACACTTGCCCAATTAGAAGATGAGGTAGCTCCATGTGAGGTTCAAATGGAAAACTGGAAAACAAACTTGCAAGTAATGGCTGCAAAAGAAAGGCAGTACATGCAACAATGTGCCAACTATAAGGCAATACTCAATCGTGTGGGTTATTCCCATGAGATAAGCCATGGAGTTTTAGTTGAAATGGCTGAGCATAGAAAGGACTTAGAGAAGAAAACTAAACCAATCCTTGATACTCTTAGGAGCTACCAAGACTTACCTCCGGATAAAGCTTTGGCTGCCTTAGCAATTGAGGATAAAAAACGGCAGTATGCTGCTGCTGAGAAGTATCTTGAAGATGTACTGCATTCAGCCCTTGCCAGTACGGAGTGA 1668 0.4448 MDGDGNGHEAEGEVRREAVGRCLSDYVDEGSTESHRYYLSRRTVLEMLRDRGYSIPSSEIELSLADFRVIHSQSPDIERLRFSATHASDPSKRILVTFCWPGVVKVNVIRSLAAQIFNKDTLTGMILIVQNQVTSQALKALDLFSFKVEIFQITNLLVNITKHVLKPKHQVLTDRQKQNLLKKYNLEEKQLPRMLQKDAIAQYYGLERGQVVKVTYGGDITQMHVTYRCVCYWKLGKILRKSHGFNSCLSFDPELKRRRSKMNEQDPVLTEPKSGSDASRIGEVKEWLAKTFEAAGKPVPEFEYTPRSVAHLYNLLTLSKAKDEAARLVARDFRQKAAEYRSQAARIREILENVGLAQESLPSNVVASTQVLANVANLLNIRDTELSSFLVALADISLRKTGVEEKRSKVLKESKILLDFTRKAIARLTYLKRTLAQLEDEVAPCEVQMENWKTNLQVMAAKERQYMQQCANYKAILNRVGYSHEISHGVLVEMAEHRKDLEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLHSALASTE 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2359 555 SUPERFAMILY Eukaryotic RPB5 N-terminal domain 32 159 IPR036710 GO:0003677|GO:0003899|GO:0006351
Dere01g2359 555 PANTHER HAUS AUGMIN-LIKE COMPLEX SUBUNIT 1 271 554 IPR026243 GO:0051225|GO:0070652
Dere01g2359 555 Pfam RNA polymerase Rpb5, C-terminal domain 158 230 IPR000783 GO:0003677|GO:0003899|GO:0006351
Dere01g2359 555 Gene3D - 28 155 IPR036710 GO:0003677|GO:0003899|GO:0006351
Dere01g2359 555 Gene3D - 156 231 IPR035913 -
Dere01g2359 555 SUPERFAMILY RPB5-like RNA polymerase subunit 156 231 IPR035913 -
Dere01g2359 555 FunFam DNA-directed RNA polymerases I, II, and III subunit RPABC1 156 231 - -
Dere01g2359 555 Pfam RNA polymerase Rpb5, N-terminal domain 32 115 IPR005571 GO:0003677|GO:0003899|GO:0006351
Dere01g2359 555 PRINTS HAUS augmin-like complex subunit 1 signature 448 465 IPR026243 GO:0051225|GO:0070652
Dere01g2359 555 PRINTS HAUS augmin-like complex subunit 1 signature 369 389 IPR026243 GO:0051225|GO:0070652
Dere01g2359 555 PRINTS HAUS augmin-like complex subunit 1 signature 325 347 IPR026243 GO:0051225|GO:0070652
Dere01g2359 555 PRINTS HAUS augmin-like complex subunit 1 signature 287 302 IPR026243 GO:0051225|GO:0070652
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2359 Dere-ChrDere01 37881998 37890436 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2359 01 37881998 37890436 Dere01g2359 01 37881998 37890436 ECH