Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2338 ATGAGCTTAGTAAAAGCTGCTTATGACATGAAGCCTTGCAGAACCAATTTGGAAGAAATGACACAAGCTTGGAGAGCACAAAATCAAGAGATGACCCTTTCTATGAGGTCTTCTATATCCTCACGGATTCAAGAGATAAAGGTTGGCTTTGGAATGATATTTAGCAATGAATCAAGAAACTTCACCCAAACCATCTCAGGTTACCTCAATGGTATCTCTAATGCAGTAGCTATAGAAGCTATTGCCTTAAAATTTGCTCTATCCAAATCAAAGGTCATTGCTTTCTGCTTCACTGAGAAGATGAACGTTGGCCCATCTGGTTTCACTAATGCTCCCGTCACAAGGTCTTTCATTGTCACCTCAGCGATTTTCACAATCTTCTTTGGGATCCAGGGCCGTTTTAACAGTCTGGGATTGTCTTATCAGGATGTTTTTGGAAGGCTTCGACTCTGGAAGTTAATTATGTCCGTATTTGCCTTCTCATCAACACCAGAGTTGATCTTTGGACTGTTTCTACTATACTATTTCAGGGTCTTTGAGAGACAGATAGGGTCCAATAAATACTCGGTCTTTATCATATTCTCCATATTAATATCGCTACTATTTGAGGTGCTTTCTGTGGCACTTTTAAAAGATCCTGCAGCAAACTTGGTCACCCCTGGACCATATGGTCTTATATTTGCTTCATTTGTACCCTTTTTCTTTGACATTCCAGTTTCAACGCGATTTCGTGTGCTTGCTTTTCATTTCTCTGATAAGTCATTCATATATCTAGCTGGTCTGCAGCTTCTTTTATCATCATGGAAAAGGTCTATCTTACCAGGGATGTGTGGTATCCTTGCTGGTTCCTTGTATCGTTTAAATGTCTTTTATATACGCAAAGCAAAGTTCCCGGAGTTTATTACCTCCTTCTTTTCAAGGATTTCTTTGCCATCTATGGGGAGTCCGCATGCAGCATCAACAAGGAATGTAGTGGGAAATATGCCATCCTATACAGCTCGCCAAATGGAGAGGAACTACCCAGCTCCCGTGCAATCTGTCCCAGAACCACCAGAGGACTCTATCTCTACACTCGTCTCTATGGGTTTTGATAGGAGCTCTGCCAGACAAGCACTAGTGCAGGCCAGAAATGATGTTAATGTGGCCACAAATATCCTACTCGAAGCAGAGTCCCACTAA 1179 0.4165 MSLVKAAYDMKPCRTNLEEMTQAWRAQNQEMTLSMRSSISSRIQEIKVGFGMIFSNESRNFTQTISGYLNGISNAVAIEAIALKFALSKSKVIAFCFTEKMNVGPSGFTNAPVTRSFIVTSAIFTIFFGIQGRFNSLGLSYQDVFGRLRLWKLIMSVFAFSSTPELIFGLFLLYYFRVFERQIGSNKYSVFIIFSILISLLFEVLSVALLKDPAANLVTPGPYGLIFASFVPFFFDIPVSTRFRVLAFHFSDKSFIYLAGLQLLLSSWKRSILPGMCGILAGSLYRLNVFYIRKAKFPEFITSFFSRISLPSMGSPHAASTRNVVGNMPSYTARQMERNYPAPVQSVPEPPEDSISTLVSMGFDRSSARQALVQARNDVNVATNILLEAESH 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2338 392 Gene3D - 109 289 IPR035952 -
Dere01g2338 392 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 349 389 IPR015940 -
Dere01g2338 392 Pfam UBA/TS-N domain 351 386 IPR015940 -
Dere01g2338 392 SUPERFAMILY UBA-like 344 388 IPR009060 GO:0005515
Dere01g2338 392 PANTHER RHOMBOID-RELATED PROTEIN 80 337 - -
Dere01g2338 392 Gene3D - 327 391 - -
Dere01g2338 392 SUPERFAMILY Rhomboid-like 109 294 IPR035952 -
Dere01g2338 392 SMART uba_6 351 388 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2338 Dere-ChrDere01 37689256 37700383 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2338 01 37689256 37700383 Dere01g2338 01 37689256 37700383 ECH