Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2294 ATGGCACAGGATCGTGTTTCTTTTGCTCCAAAGAATTTGTCTTTGGTCGAAATAGTTGACGAGGTCGAACTCGAAGAGGAAGAGAGGGAGCGGGCTGAAGATGATGGGTTAGACGATGATGAGGACGAGGACGAAGAAGAGGAAGGTCAGGATGAGTACGAGAAGGATGGATTCATAGTTGATGACGTAGAGGAAGAGGAGGAACAAGATGAAGAAGAAGAGAGGGCAGAAAGCGATGAGGAAAGGCAGAAGAAGAAAAAGAGGAAGAAAAAGGAGGAGTATGTTCTTGATGAAGATGATTATGAGCTACTGGAAGACAATAATATCAATATTCACCGTCGGAAGGAGAGCAAAAAGTTTAAGCGGCTTAAAAAAGGTCAGAGGGATACCGAGGAGGAACCTTCAGGGTTATCTGATGAGGAGGAGTTTGTTGGAAGTGGTAAAGGTGGGCGAACTGCTGAGGAGAAGCTTAAACGCAGTTTATTTGGGGATGATGAAGGAGCTCCACTTGAAGACATTGCTGAAGAGGAGGAACAGGGAGAAGAGGAGGAGGATGCAGACATTGGTGAAGATGATGAAATGGCAGACTTCATTGTGGAAGAAGATGAAGTTGATGAGCATGGAGCTCCAATGAGACGACGGAAGCTGAAGAGAAAGAAAACTAGGCAGGCACCGGGAGTCTCTTCCTCTGCATTGCAGGAAGCACAGGAATTATTTGGTGATGTTGATGAGTTGCTACAGTCTCGCAAGCAAAGTCTAGAATTACGTGAATATAGAGAGACTAGACTTGAAGATGAATTTGAGCCAATTGTTCTTTCTGAAAAGTATATGACAGAGAAGGATGACCGGATAAGGGAGCTTGATATTCCAGAAAGAATGCAGATATCAGAGGAGAGTACTGGCGCACCTCCACTAGATGCAAGTAGTATACAAGAGGAGAGTAATTGGATATATGAGCAACTTAAAAAGGGAATGGTGCCTTGGATTCACAAGAAAGATGCTGGCAATGTACCAATTGACGCTCATGATATCATCAGATTTTTGGAACTGCATCATGTGCAGAAATTAGATATTCCTTTTATCGCTATGTATCGAAAGGAGGAGTGCTTAAGCCTATTGAAAAATCCTCAGGAACCTGGCGATGAGAATTGGGATAAGAATGGAAGGACACCAACTTTAAAATGGCACAAGGTACTTTGGGCAATTCAAGACTTGGACCGGAAGTGGTTGCTTCTCCAGAAACGGAAAAGTGCCCTACAAGCATACTACAATAAACGGTTTGAAGAAGAGTCCCGCCGTGTTTATGATGAAACAAGACTTGAATTGAACCAGCAATTGTTTGAGTCAGTTATGAGATCTTTGAAGGCTGCGGAAACAGAGAGAGAGGTTGATGATGTTGACTCCAAATTTAACTTGCATTTCCCTCCTGGTGAAGTTGGTGTTGATGAAGGACAATATAAGAGACCTAAAAGGAAATCAGCCTATAGTTCTTTTAGCAAGGCAGGGCTTTGGGAGGTTGCAAGCAAGTTTGGGCGTAGTTCTGAGCAACTTGGAATGATTTTATCACTAGAAAAAATGATTAATGAGTTGGAGGATCCTAAGGAAACACCGGAGGAGATGGCTTCAAGTTTTACATGTGCTATGTGTGATACACCTCAAGAAGTACTTAAATGTGCTAGGCACATGGCAGCTGTTGAGATAAGTTGTGAGCCTAGCATTAGGAAACATGTTCGTACCAACTTTATTGACCATGCTGTGGTGTCAACTTGTCCCACTGCTGATGGAAATGTAACTATAGATTCTTTCCATCAGTTTTCTGGAATAAAGTGGCTACGGGAGAAACCATTGTCTAAATTTGAGGATGCACAATGGCTCCTTATACAGAAGGCAGAAGAGGAGAAACTTCTTCAAGTTACCATTAAGCTGCCTGAAGAGTATCTTGAGAAGTTGACAAATGAATTCAATGATTATTACATTAGTGACAGTGTTAGTAGATCTGCCCAACTGTGGAATGAACAGAGGAAACTGATACTGCATGATGCAATTTTCCGTTTTCTTTTACCATCAATGGAAAAAGAGGCAAGAGCCTACTTGACAAGCAAAGCGAAGCATTGGTTACTTATGGAGTATGGGAAGGCCTTGTGGAATAAGGTCTCTTTGGGACCTTATCAACGGAAGGATAATGATCTTAGCTCCGATGAGGAAGCTGCCCCAAGGGTTATGGCTTGCTGTTGGGGTCCTGGAAAACCACTAACAACTTTTGTAATGTTAGATTCATCAGGAGAGGTGCTTGATGTGCTTTACACAGGGTCCCTTACTCTACGGTCTCAAAATGTTAATGACCAGCAACGGAAGAAAAATAACCAGGAACGTGTGTTGAAGTTCATGACAGACCATCAACCACATGTTGTTGTTCTAGGAGCAGTGAATTTGTCTTGTACACGTTTGAAGGATGATATATATGAGATAATTTTTAAAATGGTGGAGGAAAATCCTAGAGATGTTGGGCATGAGATGGATGGCCTTAGCATTGTGTATGGGGATGAATCTCTTCCTCATTTGTATGAAAATTCTCGAATTTCCTCTGAACAACTTCCTTCACAACAAGGTATAGTGAGGCGGGCTGTAGCACTTGGCAGGTATCTGCAGAATCCCTTGGCAATGATTGCAACATTGTGTGGACCTAGAAAAGAAATTTTATCATGGAAACTGAACTCTTTGGAGAGCTTTCTCAACCCTGATGAGAAATTTGGGATGGTTGAGCAGATTATGGTAGATGTGACCAATCAGGTGGGCCTAGACATTAATTTAGCCATAAGTCATGAGTGGTTATTTGCTCCCTTACAGTTTATTTCTGGGCTTGGTCCAAGAAAGGCTGCATCCTTACAGAGGTCCCTGGTAAGAGCAGGAGCAATTTTTACTCGAAAGGACTTTGTGACAGAACATAAACTGGGTAAAAAGGTTTTTGTCAATGCAGTAGGCTTCTTGCGTGTTCGGAGGAGTGGGTTGGCTGCTAGCAGCAGCCAATTTATTGATTTACTGGATGATACGAGAATTCATCCAGAATCATACACTCTAGCACAAGAGTTGGCTAAAGATGTATATGAGGCAGATGGCACTGGTGATGCAAATGATGATGATGATGCACTGGAGATGGCTATAGAGCATGTGAGAGACCGCCCTAATTATTTGAAAAATCTTGATGTTGAGGAATATGCCATAGGGAAGAAGCGGCAGAACAAAAGAGAAACTTTCTATGACATAAAAAGAGAATTGATTCAGGGATTTCAGGATTGGCGTAAACAATATGAAGAACCAAATCAGGATGAGGAGTTCTATATGATATCAGGTGAAACTGAGGAGACACTAGCTGAAGGGAAAATTGTCCAAGCCACAATTCACAGAGTACAAGCCCAAAAAGCAATATGTGCGCTTGAATCTGGGTTAACTGGAATCCTCATGAAAGAAGACTACACAGATGACTGGAGGGATTTAGTTGAGTTATCTGACAGGCTGCAAGAGGGTGACATTCTCACCTGCAAAATCAAATCAATTCAGAAGAATAGGTATCAAGTATTTCTTGTATGTAGGGAGAGTGAAATGAGAAGTAATCGTTTACAGAACAACCGTAATCTTGACCCCTACTACCATGAAGACCGGAGCTGTCTACAGAGTGAACAAGACAAAGCTCGCAAAGAAAAAGAGCTTGCCAAGAAACATTTTAAGCCAAGGATGATAGTTCATCCACGTTTCCAGAACATAACTGCAGATAAAGCAATGGAGTTCTTGTCTGACAAAGATTTTGGTGAAAGTATTATCCGGCCTAGTTCACGTGGACCTTCATTTCTTACTTTAACTCTGAAAATCTATGATGGAGTTTATGCCCACAAAGATATAATTGAAGGTGGAAAGGAACACAAGGACATCACAAGCTTACTTCGAATTGGGAAGACACTAAAAATTGGAGAGGACACTTTTGAGGATTTAGATGAGGTGATGGACCGCTATGTTGATCCCTTGGTCACACACTTAAAGGCAATGTTAAACTATCGCAAGTTCAGGAAGGGTACAAAAGCAGAAGTTGACGAACTTTTGAGGATGGAGAAAGCAGAGTATCCTATGCGGATAGTCTATAGCTTTGGCATCTCTCATGAACATCCTGGCACATTCATATTAACTTACATAAGAAGTACAAATCCACACCATGAATACATTGGACTTTATCCAAAAGGCTTCAAGTTCCGGAAAAGGATGTTTGAGGACATTGATCGGCTTGTGGCATATTTTCAGAGGCATATAGATGATCCTCAGCATGAGTTAGCACCTTCCATTAGATCTGTTGCTGCTATGGTGCCAATGCGAAGCCCTGCCACTGGTGGCTCATCAGCGGCGTCAGTGGGTAGTGGCTGGGGTGGTTCTAATGAGGGTGGCTGGAGGAGTCACGCAGGTGATAGGGATCGATCTTCTACACCTGGTTCTAGGACAGGACGAACTGATTACAGAAACAGTGGGAATCGGGATGACCACCCTAGTGGGCTACCACGCCCATACAGCGGTGGACGTGGACGTGGTCGAGGGTCATATAATAGTCGAGGAAACAGCTCCAGTAATGAAAGGCAGGACTCTGGTTTTGGTGCAGCTAGATGGGGTTCTGTTGCAAAGGATGGAGATGAAGGTTTAAGCAATTTTCCTGGAGCTAAGGTTCAAAATTCCCCAGGAAGGGAAGCTTTTCCTGGTGGTTGGGGGTCTGGTGGAAGTGGCGGAGGCAGTGGTTGGGGTGGCGGAGGCAGTGCCAATGACAATGCTGGCTGGGGACATGGAGGTGGTGGTACTGGTGCTACTGATGCTGAGCATGGAAGCTCCGGCTGGGGAAGTGGTCTTAAGAAGTCTGATAATGGATGGTCTGGAAATGCGAGCAGTGGCACTGGTTGGTGA 4935 0.4334 MAQDRVSFAPKNLSLVEIVDEVELEEEERERAEDDGLDDDEDEDEEEEGQDEYEKDGFIVDDVEEEEEQDEEEERAESDEERQKKKKRKKKEEYVLDEDDYELLEDNNINIHRRKESKKFKRLKKGQRDTEEEPSGLSDEEEFVGSGKGGRTAEEKLKRSLFGDDEGAPLEDIAEEEEQGEEEEDADIGEDDEMADFIVEEDEVDEHGAPMRRRKLKRKKTRQAPGVSSSALQEAQELFGDVDELLQSRKQSLELREYRETRLEDEFEPIVLSEKYMTEKDDRIRELDIPERMQISEESTGAPPLDASSIQEESNWIYEQLKKGMVPWIHKKDAGNVPIDAHDIIRFLELHHVQKLDIPFIAMYRKEECLSLLKNPQEPGDENWDKNGRTPTLKWHKVLWAIQDLDRKWLLLQKRKSALQAYYNKRFEEESRRVYDETRLELNQQLFESVMRSLKAAETEREVDDVDSKFNLHFPPGEVGVDEGQYKRPKRKSAYSSFSKAGLWEVASKFGRSSEQLGMILSLEKMINELEDPKETPEEMASSFTCAMCDTPQEVLKCARHMAAVEISCEPSIRKHVRTNFIDHAVVSTCPTADGNVTIDSFHQFSGIKWLREKPLSKFEDAQWLLIQKAEEEKLLQVTIKLPEEYLEKLTNEFNDYYISDSVSRSAQLWNEQRKLILHDAIFRFLLPSMEKEARAYLTSKAKHWLLMEYGKALWNKVSLGPYQRKDNDLSSDEEAAPRVMACCWGPGKPLTTFVMLDSSGEVLDVLYTGSLTLRSQNVNDQQRKKNNQERVLKFMTDHQPHVVVLGAVNLSCTRLKDDIYEIIFKMVEENPRDVGHEMDGLSIVYGDESLPHLYENSRISSEQLPSQQGIVRRAVALGRYLQNPLAMIATLCGPRKEILSWKLNSLESFLNPDEKFGMVEQIMVDVTNQVGLDINLAISHEWLFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFVTEHKLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYTLAQELAKDVYEADGTGDANDDDDALEMAIEHVRDRPNYLKNLDVEEYAIGKKRQNKRETFYDIKRELIQGFQDWRKQYEEPNQDEEFYMISGETEETLAEGKIVQATIHRVQAQKAICALESGLTGILMKEDYTDDWRDLVELSDRLQEGDILTCKIKSIQKNRYQVFLVCRESEMRSNRLQNNRNLDPYYHEDRSCLQSEQDKARKEKELAKKHFKPRMIVHPRFQNITADKAMEFLSDKDFGESIIRPSSRGPSFLTLTLKIYDGVYAHKDIIEGGKEHKDITSLLRIGKTLKIGEDTFEDLDEVMDRYVDPLVTHLKAMLNYRKFRKGTKAEVDELLRMEKAEYPMRIVYSFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQHELAPSIRSVAAMVPMRSPATGGSSAASVGSGWGGSNEGGWRSHAGDRDRSSTPGSRTGRTDYRNSGNRDDHPSGLPRPYSGGRGRGRGSYNSRGNSSSNERQDSGFGAARWGSVAKDGDEGLSNFPGAKVQNSPGREAFPGGWGSGGSGGGSGWGGGGSANDNAGWGHGGGGTGATDAEHGSSGWGSGLKKSDNGWSGNASSGTGW 1644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2294 1644 MobiDBLite consensus disorder prediction 168 203 - -
Dere01g2294 1644 SUPERFAMILY RuvA domain 2-like 1012 1101 IPR010994 -
Dere01g2294 1644 MobiDBLite consensus disorder prediction 19 231 - -
Dere01g2294 1644 FunFam Transcription elongation factor spt6 485 760 - -
Dere01g2294 1644 CDD SH2_Cterm_SPT6_like 1347 1433 IPR035018 -
Dere01g2294 1644 MobiDBLite consensus disorder prediction 1625 1644 - -
Dere01g2294 1644 FunFam Transcription elongation factor spt6 908 1001 - -
Dere01g2294 1644 Gene3D - 494 931 IPR023323 -
Dere01g2294 1644 MobiDBLite consensus disorder prediction 1455 1644 - -
Dere01g2294 1644 Gene3D SH2 domain 1234 1345 IPR036860 -
Dere01g2294 1644 Gene3D - 1007 1099 IPR042066 -
Dere01g2294 1644 MobiDBLite consensus disorder prediction 78 97 - -
Dere01g2294 1644 FunFam Transcription elongation factor spt6 1346 1438 - -
Dere01g2294 1644 SUPERFAMILY SH2 domain 1251 1337 IPR036860 -
Dere01g2294 1644 Gene3D - 300 493 IPR023319 -
Dere01g2294 1644 Gene3D - 728 1118 IPR037027 GO:0006139
Dere01g2294 1644 SUPERFAMILY Ribonuclease H-like 738 893 IPR012337 -
Dere01g2294 1644 FunFam Transcription elongation factor Spt6 1005 1099 - -
Dere01g2294 1644 Coils Coil 15 35 - -
Dere01g2294 1644 MobiDBLite consensus disorder prediction 19 77 - -
Dere01g2294 1644 FunFam Transcription elongation factor spt6 728 894 - -
Dere01g2294 1644 Gene3D - 267 1001 - -
Dere01g2294 1644 PIRSF Spt6 13 1502 IPR017072 GO:0032968
Dere01g2294 1644 SMART rnase_8s 738 856 IPR006641 GO:0006139
Dere01g2294 1644 Pfam Holliday-junction resolvase-like of SPT6 737 893 IPR028231 -
Dere01g2294 1644 Gene3D - 1119 1206 IPR012340 -
Dere01g2294 1644 MobiDBLite consensus disorder prediction 1527 1542 - -
Dere01g2294 1644 FunFam Transcription elongation factor spt6 300 482 - -
Dere01g2294 1644 Pfam SH2 domain 1215 1432 IPR035420 -
Dere01g2294 1644 Pfam Helix-hairpin-helix motif 897 998 IPR032706 -
Dere01g2294 1644 ProSiteProfiles S1 domain profile. 1126 1197 IPR003029 GO:0003676
Dere01g2294 1644 FunFam Transcription elongation factor spt6 1119 1207 - -
Dere01g2294 1644 Coils Coil 60 93 - -
Dere01g2294 1644 Gene3D SH2 domain 1346 1441 IPR036860 -
Dere01g2294 1644 Pfam HHH domain 1013 1100 IPR041692 -
Dere01g2294 1644 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 25 1499 IPR017072 GO:0032968
Dere01g2294 1644 SUPERFAMILY RuvA domain 2-like 909 999 IPR010994 -
Dere01g2294 1644 MobiDBLite consensus disorder prediction 144 166 - -
Dere01g2294 1644 FunFam Transcription elongation factor spt6 1234 1345 - -
Dere01g2294 1644 SMART S1_6 1124 1197 IPR022967 -
Dere01g2294 1644 SUPERFAMILY Tex N-terminal region-like 329 717 - -
Dere01g2294 1644 CDD SH2_Nterm_SPT6_like 1248 1336 IPR035019 -
Dere01g2294 1644 Pfam Acidic N-terminal SPT6 39 129 IPR028083 -
Dere01g2294 1644 SUPERFAMILY Nucleic acid-binding proteins 1121 1201 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2294 Dere-ChrDere01 37143474 37153146 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2294 01 37143474 37153146 Dere01g2294 01 37143474 37153146 ECH