Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2213 ATGGAGTCGAGCATTTTGGAATCCATCGGCATAGAGATCATTGGAGTAATGTCCCCTGTCTCAATCTGCATGTTCCTTGTTGTCCTCCTCGTCTATTCCCTCTCTTCCTACAACCCCTTCTCATCTGCTTCGGTGGATACCATTCGTACTGCTGCCAACCTCGTCTACGTCGAGAACCCTACCGACTCTGCTTCCCAGAAGCTCGAAGGCGCCCTTCTTAACGCTTTGGTCTTCGTCGTCTTGATCGCCATCGTCACCTTCCTCCTTGTCCTTCTGTACTATTACAACTTCACAAATTTCCTCAAGAACTACATGCGTTTCTCCGCCTTCTTTGTTCTTGGCACCATGGGCGGATCTATCTTCTTGTCCGTCATTCAGAAGTTCTCCATTCCTGTTGATTCCATCACTTGTTCTCTTCTGCTTTTCAATTTCACTGTTGTCGGTGTTCTCTCCGTGTTTTCGGGTGGGATCCCAATTTTGTTGAGGCAGACCTACATGGTTTGTTTGGGGATTATTGTGGCGGCCTGGTTCACAAAATTGCCTGAGTGGACTACTTGGGTTTTGCTAGTCGCATTAGCTGTGTATGATTTGGTGGCCGTTCTGGCACCCGGTGGCCCGCTTAAGCTGTTGGTGGAATTGGCCTCAACTAGGGATGAGGAGCTCCCTGCCCTAGTGTACGAGGCTCGTCCTACGGTCGCTCGTACTGGGCAACGTGGAGCCTCGTCTTTAGGGCTTTTGGTCGCTGGAGTTTCAGATTCTTCGTCAATCGAGCTTCAAGCGGTGTCAAGGGATAACGTCAATAGAAAGGAGAACGAGGGTCGCAGTAATTCCGACTATTCTGCAGTGACCTTGGGGGATTTTCAGAATGAGGAGGTTCATAGTGACAGAGATGATGGGGAGAGTTCGCCACTGGTGACTACTGTACGAGAAAGGCATTCATCAAGCAGTGCTTCGTCGCAGTATTCAACGGTTGTTGTTCCATCCAGTCAAGGTCAGCAATTTAATGGCAGGGACCCTGAAGTTGTTGGCGAGGAAACGTCTCCCCTGGTTGAACTGATTGAAATGGGGAATGAAGGAAGGCAGACGAGGAGGGGTGACGTGGAAATCGCTGACAGGGGTATTAAACTTGGTCTAGGAGACTTTGTCTTCTACAGTGTCCTTGTGGGTCGAGCTGCAATGTATGATCTTATGACAGTGTATGCTTGTTACCTTGCAATTATATCAGGACTAGGGTGCACTCTTATTTTGTTGTCGGTGTGCCGTCGAGCTCTGCCTGCACTCCCTATTTCTATCACACTGGGTGTTATTTTTTATTTCTTGACAAGATTAATAATGGAACCCTTCATTGTTGGGACAGCCACAAATTTAATGATGTTTTGA 1380 0.4819 MESSILESIGIEIIGVMSPVSICMFLVVLLVYSLSSYNPFSSASVDTIRTAANLVYVENPTDSASQKLEGALLNALVFVVLIAIVTFLLVLLYYYNFTNFLKNYMRFSAFFVLGTMGGSIFLSVIQKFSIPVDSITCSLLLFNFTVVGVLSVFSGGIPILLRQTYMVCLGIIVAAWFTKLPEWTTWVLLVALAVYDLVAVLAPGGPLKLLVELASTRDEELPALVYEARPTVARTGQRGASSLGLLVAGVSDSSSIELQAVSRDNVNRKENEGRSNSDYSAVTLGDFQNEEVHSDRDDGESSPLVTTVRERHSSSSASSQYSTVVVPSSQGQQFNGRDPEVVGEETSPLVELIEMGNEGRQTRRGDVEIADRGIKLGLGDFVFYSVLVGRAAMYDLMTVYACYLAIISGLGCTLILLSVCRRALPALPISITLGVIFYFLTRLIMEPFIVGTATNLMMF 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2213 459 FunFam Presenilin 353 450 - -
Dere01g2213 459 MobiDBLite consensus disorder prediction 289 305 - -
Dere01g2213 459 MobiDBLite consensus disorder prediction 306 336 - -
Dere01g2213 459 Gene3D Presenilin 354 450 IPR042524 -
Dere01g2213 459 PRINTS Presenilin family signature 17 27 IPR001108 GO:0004190|GO:0016020|GO:0016485
Dere01g2213 459 PRINTS Presenilin family signature 179 186 IPR001108 GO:0004190|GO:0016020|GO:0016485
Dere01g2213 459 PRINTS Presenilin family signature 196 213 IPR001108 GO:0004190|GO:0016020|GO:0016485
Dere01g2213 459 PANTHER PRESENILIN 2 459 IPR001108 GO:0004190|GO:0016020|GO:0016485
Dere01g2213 459 MobiDBLite consensus disorder prediction 262 343 - -
Dere01g2213 459 Pfam Presenilin 12 449 IPR001108 GO:0004190|GO:0016020|GO:0016485
Dere01g2213 459 SMART psh_8 69 445 IPR006639 GO:0004190|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2213 Dere-ChrDere01 36106291 36107670 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2213 1 459 Miscellaneous Gene Families AT1G08700 67.373 0.0 575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2213 01 36106291 36107670 Dere01g2213 01 36106291 36107670 ECH