Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2173 ATGCTTAAAAATGTCGGTACCTCGGCTCGTATATGGGGCAACGACATGGCTGATGCTAAGGATATGGACGACGCATGTAAATGGTTTGATATGTCGCTGGATGAGTTTCAGAGAATTAGGAAGAAAGAAGAGGAGACCGGGCGCTCAGTGAATTCATTTGCTGACTTGGAAAATGGGTTTCAATTGGTTTATGGGAAGAAAAAGAGAGGAGGGAGTCTTGAGGGACCAGGGAAAGAGGTAGAACTAAACTCAAGTCCAGCCTCGGGTGTTAACATGGCCACAAAGGACTGGAAAATCACCGGGCCGAAGCCAAAGGTGCCGTTTCATATACCGACTATTAGGAGGCCTCAAGATGAGTATAATATACTGGTTAATAATTCAAATAAGCCTTTTGAACATGTCTGGTTGCGGAGGAGTGATGATGGTCAGAGGTTTATTCATCCCCTGGAGAATCTCTCTGCCTTGGATTTTGTTGACAAAGATTGTGGAGATATTGAGGCAATAAAGCCTCCCCCAATAGAATGTACCCCTTTCAAAATAGTGAAGGACGTTAAAGATTTGAAGGAGTTGGCTGCTAAGCTGCGTGCTGTTAAAGAATTTGCGGTTGATTTAGAACATAATCAATATCGGTCTTTTCAAGGATTGACTTGCTTGATGCAAATCTCAACCAGGACTGAAGATTTTGTGTTAGACACTCTGAAGCTGCATATTCATGTTGGGCCCTATTTAAGGGAAGTTTTCAAGGATCCTGCCAAGAGGAAGGTTATGCATGGAGCAGATCGAGATATTTTGTGGCTTCAACGGGATTTTGGCATTTACATTTGTAATTTATTTGACACCTGCCAGGCCTCAAGGGTATTAAAATTGGAAAGAAATAGTTTAGAGTATCTTCTACATCACTATTGTGGAGTTACTGCAAATAAAGAGTACTTTTTTGTTTTCCTTTCATTATACCAGAATGCAGATTGGAGACTACGTCCTCTTCCTAATGAGATGCTTAGATATGCCAGAGAAGATACACACTATCTGCTGTATATATATGATTTAATGAGAATGAAGCTATTTGGATTGTCTAAGGAGTCTCGTAGTTCTGCTACTGCTCTGGTGGAGGTGTACAAGCTCAGTTATGATGTCTGTATGCAGCTATATGAGAAAGAGGTTCTGACTGAGAATTCCTACCTATACATATATGGGTTGCAAGGGACTGGTTTCAATGCTCAGCAGTTGGCCATTGTTTCAGGGCTTTATGAATGGCGGGATATTGTTGCTCGTGCAGAGGATGAGAGCACTGGCTATATATTGCCAAATAAAACTCTTTTGGAAATCGCTAAGCAGAAGCCTGTCACCGCAAGCAAACTACACAAATTGATAAAATCAAAGCACCCATATGTTCAGTGCAACTATGATTGCCTTGTCAGCATCGTTATACATTCTATGCAAAATGCTTCTGCCTTTGAAGCAGTTGCACAAAAATTGAAAGAGGGACTTGTCACAACTGCATCAGGTATAATACCTAAAAAATATGGAACTGAAGCTCCCTTACCTAAAATGCCAAACTCACAGATGACAAATGCAAGGAAAGAAAGTATTGGAGTTGTCAGTGCCAAATCACCTTTTTCTGCTGCCCTTGGAATGCAGACGGTTCAGCATCAAAATAAATATGGACAATTTAAATATGAGTCGAATAGTTTCACTTCAGAATTTCCTAGGGACAAGGATGCAAATATTGGTACTCCCTCCACAGCAAAGGGCAAGGAAGAAGTCAAGCTAGAGCAGATTAGATTCTCTGTCAATCTTCCTTTCTATTCAGTTTTGGGTAGCAATTACAAGTCAAGACTAGTCGTAGAAACCCCTAGTGTAGCTTGTCAAACATCAGAGTCCCAGAAACCCGTTAATGATCCAGAGAGTATGACACGCGGCATCCTAGAAAGCATAAATGAGCTCAAGGAGAAAAATTCTGCGTCCGTTTCAGCAAAAGAGAAAGAGGAAGAGCCAATGAATCTCTCAGATTTGTCATTAAATTTCCAGAAATGCTTCCAGACGAACAATCAAAATAAATCCAGACTGTCCAAGAAAACTGAAAAACCTAATGGCTTATTGCAGCTACAGCCACATTTGACTATGAAGCAGAAAGGAAATTGGTTATGTTTGAAAACGATGCAGAGTATGCATCTTCCAATGGTGATGATGGTATTACACATCTGCGTGAGTTGGATAGGAGAGATAAAGTTTCATGACAGGACCGAGTGA 2250 0.4089 MLKNVGTSARIWGNDMADAKDMDDACKWFDMSLDEFQRIRKKEEETGRSVNSFADLENGFQLVYGKKKRGGSLEGPGKEVELNSSPASGVNMATKDWKITGPKPKVPFHIPTIRRPQDEYNILVNNSNKPFEHVWLRRSDDGQRFIHPLENLSALDFVDKDCGDIEAIKPPPIECTPFKIVKDVKDLKELAAKLRAVKEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVLDTLKLHIHVGPYLREVFKDPAKRKVMHGADRDILWLQRDFGIYICNLFDTCQASRVLKLERNSLEYLLHHYCGVTANKEYFFVFLSLYQNADWRLRPLPNEMLRYAREDTHYLLYIYDLMRMKLFGLSKESRSSATALVEVYKLSYDVCMQLYEKEVLTENSYLYIYGLQGTGFNAQQLAIVSGLYEWRDIVARAEDESTGYILPNKTLLEIAKQKPVTASKLHKLIKSKHPYVQCNYDCLVSIVIHSMQNASAFEAVAQKLKEGLVTTASGIIPKKYGTEAPLPKMPNSQMTNARKESIGVVSAKSPFSAALGMQTVQHQNKYGQFKYESNSFTSEFPRDKDANIGTPSTAKGKEEVKLEQIRFSVNLPFYSVLGSNYKSRLVVETPSVACQTSESQKPVNDPESMTRGILESINELKEKNSASVSAKEKEEEPMNLSDLSLNFQKCFQTNNQNKSRLSKKTEKPNGLLQLQPHLTMKQKGNWLCLKTMQSMHLPMVMMVLHICVSWIGEIKFHDRTE 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2173 749 SUPERFAMILY Ribonuclease H-like 113 357 IPR012337 -
Dere01g2173 749 SMART hrdc7 405 484 IPR002121 GO:0003676
Dere01g2173 749 CDD Rrp6p_like_exo 174 373 - -
Dere01g2173 749 ProSiteProfiles HRDC domain profile. 405 485 IPR002121 GO:0003676
Dere01g2173 749 FunFam Protein RRP6-like 2 isoform A 112 390 - -
Dere01g2173 749 FunFam Putative exosome component 10 392 487 - -
Dere01g2173 749 Gene3D - 112 390 IPR036397 GO:0003676
Dere01g2173 749 Pfam 3'-5' exonuclease 179 353 IPR002562 GO:0003676|GO:0006139|GO:0008408
Dere01g2173 749 SUPERFAMILY HRDC-like 387 479 IPR010997 GO:0000166|GO:0044237
Dere01g2173 749 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 22 695 IPR045092 GO:0000175|GO:0000467
Dere01g2173 749 SMART 35exoneu6 178 355 IPR002562 GO:0003676|GO:0006139|GO:0008408
Dere01g2173 749 MobiDBLite consensus disorder prediction 68 87 - -
Dere01g2173 749 Pfam HRDC domain 408 456 IPR002121 GO:0003676
Dere01g2173 749 Gene3D HRDC domain 391 486 IPR044876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2173 Dere-ChrDere01 35696185 35705776 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2173 01 35696185 35705776 Dere01g2173 01 35696185 35705776 ECH