Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2161 ATGGAGGTATCTGTTTCTCCACAAGCATTGCATACACCTGGTCGCAAAATTTTATCCACTGGTCCCCAGAAAGATGTGTGGCTTGTAGTGCGAGAAGGATCTCTAAATGATGTGGAGTTAGCCTTGGCACTATTGAAGAAGAATGGGGGCAATATCAATTCAAGGAACACTTTTGGACTTACCCCTCTTCATATTGCCACTTGGAGGAACCACATCCCCATGATCAAGAGGCTTCTTGCAGCTGGTGCAGACCCTGATGCTCAAGATGGAGAATCAGGATGGAGTAGCCTTCACAGAGCACTGCATTTTGGGCATCTTGCTGTGGCAGGCATCCTTCTTCAGCATGGTGCGTCTATTACAATGGGGGACTCTAAATCTCGAATACCTGTAGATCTTTTATCTGGCCCTGTATTTCAGGCTTCTGGAAATGAATGTAATTCAGTGGCTACTGAGGTCTTTAGCTGGGGAAGTGGCACAAACTATCAACTTGGAACTGGAAATGCACATATTCAAAAATTACCTTGCAGAGTAGATTCACTTAGTGGCTCTTACATAAAGTTGATTTCTGCGGCGAAGTTCCACAGCGTGGCTGTTACTGCTCATGGGGAAGTGTATACCTGGGGATTTGGAAGGGGGGGCCGACTAGGCCACCCTGATTTTGACATCCACAGTGGTCAAGCTGCAGTTATCACTCCCCGTCGGGTAACTTCTGGTCTGGGTGCCCGCCGAGTGAAGGCGACTGCTGCTGCTAAGCATCATACTGTTATTGCTACAGAAGGTGGGGAAGTGTTCACCTGGGGATCCAATAGAGAGGGACAGCTCGGCTACACTTCTGTAGATACCCAACCCACACCACGTAGAGTGACTTCTTTACGGTCCAAAATTGTTGCTGTTGCTGCAGCAAACAAGCATACTGCTGTAGTTTCCGATTTAGGTGAAATTTTTACCTGGGGTTGCAATAGAGAGGGTCAGCTTGGTTATGGCACCTCAAACTCAGCATCTAATTACACCCCACATGTAGTTGAATACTTGAAGGGAAAGACTTTGACTGGGGTTTCTGCTGCAAAATATCATACTGTTGTATTAGGATCTGATGGGGAGGTATATACTTGGGGTCATCGACTTGTTACTCCAAGACGTGTTGTCATTACTAGGAACTTGAAGAAAAGTGGAAGCACTCTTTTGAAGTTTCATCGCATGGAACGACTTCATGTGGTTTCGGTAACTGCAGGAATGGTACATAGCATGGCTCTTACAGATGACGGTGCATTGTTCTATTGGCTCTCCTCAGATCCTGATCTTAAATGCCAACAGCTATATGCTATGGCTGGAAGAAATATGGTGAGCATATCAGCTGGAAAGTACTGGACTGCAGCAGTTACAAGTACAGGTGATGTTTATATGTGGGATGGGAAGAAAGGTAAGGAAAAGCCACCTGTTGCAACTCGGTTGCATGGTGTAAAGAGAGCTTCTTCAGTTTCAGTTGGTGAAACACATTTACTGGTTGTGGCTTCCCTCTATCACCCAGCCTATCCTCTTAATGTTATGGGGACTTCTCAGGAGCTCAAGTTGAATAAAAAGGATCATATGGAAGAGTTTACGGAAGATATTTTATTTGAGGGTTTGGAATCCAATAATATGACTTCAAGTATGCAAGAAGATAATTTTGGGCAGAGGATTGTACCCAGCTTAAAAAGCCTTTGTGAAAAAGTTGCCGCAGATTGCCTAGTGGAGCCACGAAATGCTATTCAATTGCTTGAGATTGCTGATTCCCTAGGAGCTAATGATTTGAAGAAATATTGTGAGGAGATTGTCATGCGCAACCTTGATTATATCTTTACAGTTTCTTCACATACTGTGGCAAGTGCTTCACTAGATATTTTGGCTAACCTTGAGAGGTTATTAGACCGGAGGTCATCTGAGCCATGGAATCACCACCGGCTCCCTACTGTAACTGCTACTTTTCCTGCCATCATAAACAGTGAAGATGATAATAGTGACCTGGAGTTTCATAGGACTTGTGACAAACCAATGAAATTGATGCTGGAAAAAGGCCAAAGATTAGAATTGTTTCTACAGCCTAAGGATGATCCCAATCAGGAAAACTCCAAAGTAGTTCGTGCTCTAAGGAAAAAGTTGCAGCAGATTGAGATGCTTGAAGCTAAGCAATCTAAGGGTCATCATCTTGATGACCAGCAGATTGCAAAGCTTCAATCTAAGTCAGCTCTGGAGAGCTCACTTGCGGAGCTAGGTATTCCTGTTGAAACTTCACAGAATAAAGAATCGTCTTCTGTACTTGCAGATGGGAAGGGTAGTAAAAAGGGTAAACTATCAAGGAAACAGAGAAAGAACAGCAAATCAAGTGTGGTGCATACTGAAGTGGAATCTGCTCTTATTGGAACAGAAGTAATATCAGAACCTGCCAAGGACATGCTGGACATTGAGATCTTGGAGGTTTCTGAGACAAAGGTGGAAGATTCTATGTGTGAACAAACTACAGCTGACCAAGGTGCAAAAGATTCAGCGTTTTTGGTTCAGAAGAAAGACAATTTAGAGTTGCTAAACAACAAGGGTCAATCACTGAAGGTTTCTAAGAAGAAGGGCAAGAAAGGTGGGCTTTCTATGTTTTTGAGTGGTGCCCTCGATGACATCCCAAAAGAGGTGGCTCCACCATCACCCATACAGAGAAATGAGGGTCCTGCATGGGGTGGGGCCAAGTATTCAAAGGGTTCTGCTTCTCTTCGTGAAATTCAGGTTCAGCAGAGCAAAATTAAGGAAAACAAGCCAACTAGGAGCAAAAATCATGGGGAAGATCTTTGTGATAGTGGCAACGGGGGGAAATTATGTTTGAGTTCATTTCTTCCTTCCAGCCCAATACCTGTTGCCTCAAGTCAAAGTTCCCAGGTATCTGATGGAGAAAGGAGTGCCCTTCCTTGGACTGCTTCCGGAACTCCACCTCATCTCTCTCGGCCATCTTTAAGGGACATCCAAATGCAGCAGGGCAAAATGCATTGGAGTCTTTCCCATTGTCCAAAGACCAAAACAGCTGGATTTGCTGTTGCTACAGGTCAAGGCTCACCATGTGAAGCTACTGGGATGAACCGCTGGTTCAAGCCTGAGGTGGAGACACCATCCTCGATTCGTTCTATTCAGATTGAGGAAAAGGCCATGAAGGATCTCAAGCGCTTTTACAGCAGCGTTAAGGTTGTCAAGAACAAGTCTTAA 3225 0.445 MEVSVSPQALHTPGRKILSTGPQKDVWLVVREGSLNDVELALALLKKNGGNINSRNTFGLTPLHIATWRNHIPMIKRLLAAGADPDAQDGESGWSSLHRALHFGHLAVAGILLQHGASITMGDSKSRIPVDLLSGPVFQASGNECNSVATEVFSWGSGTNYQLGTGNAHIQKLPCRVDSLSGSYIKLISAAKFHSVAVTAHGEVYTWGFGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGARRVKATAAAKHHTVIATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVTSLRSKIVAVAAANKHTAVVSDLGEIFTWGCNREGQLGYGTSNSASNYTPHVVEYLKGKTLTGVSAAKYHTVVLGSDGEVYTWGHRLVTPRRVVITRNLKKSGSTLLKFHRMERLHVVSVTAGMVHSMALTDDGALFYWLSSDPDLKCQQLYAMAGRNMVSISAGKYWTAAVTSTGDVYMWDGKKGKEKPPVATRLHGVKRASSVSVGETHLLVVASLYHPAYPLNVMGTSQELKLNKKDHMEEFTEDILFEGLESNNMTSSMQEDNFGQRIVPSLKSLCEKVAADCLVEPRNAIQLLEIADSLGANDLKKYCEEIVMRNLDYIFTVSSHTVASASLDILANLERLLDRRSSEPWNHHRLPTVTATFPAIINSEDDNSDLEFHRTCDKPMKLMLEKGQRLELFLQPKDDPNQENSKVVRALRKKLQQIEMLEAKQSKGHHLDDQQIAKLQSKSALESSLAELGIPVETSQNKESSSVLADGKGSKKGKLSRKQRKNSKSSVVHTEVESALIGTEVISEPAKDMLDIEILEVSETKVEDSMCEQTTADQGAKDSAFLVQKKDNLELLNNKGQSLKVSKKKGKKGGLSMFLSGALDDIPKEVAPPSPIQRNEGPAWGGAKYSKGSASLREIQVQQSKIKENKPTRSKNHGEDLCDSGNGGKLCLSSFLPSSPIPVASSQSSQVSDGERSALPWTASGTPPHLSRPSLRDIQMQQGKMHWSLSHCPKTKTAGFAVATGQGSPCEATGMNRWFKPEVETPSSIRSIQIEEKAMKDLKRFYSSVKVVKNKS 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2161 1074 Pfam Regulator of chromosome condensation (RCC1) repeat 312 362 IPR000408 -
Dere01g2161 1074 Pfam Regulator of chromosome condensation (RCC1) repeat 261 308 IPR000408 -
Dere01g2161 1074 Pfam Regulator of chromosome condensation (RCC1) repeat 151 198 IPR000408 -
Dere01g2161 1074 Pfam Regulator of chromosome condensation (RCC1) repeat 202 256 IPR000408 -
Dere01g2161 1074 ProSiteProfiles Ankyrin repeat region circular profile. 92 123 - -
Dere01g2161 1074 Gene3D - 21 137 IPR036770 -
Dere01g2161 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 150 201 IPR000408 -
Dere01g2161 1074 MobiDBLite consensus disorder prediction 918 939 - -
Dere01g2161 1074 SUPERFAMILY Ankyrin repeat 36 132 IPR036770 -
Dere01g2161 1074 PRINTS Chromosome condensation regulator RCC1 signature 314 328 IPR000408 -
Dere01g2161 1074 PRINTS Chromosome condensation regulator RCC1 signature 151 167 IPR000408 -
Dere01g2161 1074 PRINTS Chromosome condensation regulator RCC1 signature 261 277 IPR000408 -
Dere01g2161 1074 PRINTS Chromosome condensation regulator RCC1 signature 298 314 IPR000408 -
Dere01g2161 1074 PRINTS Chromosome condensation regulator RCC1 signature 204 220 IPR000408 -
Dere01g2161 1074 PRINTS Chromosome condensation regulator RCC1 signature 411 429 IPR000408 -
Dere01g2161 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 366 421 IPR000408 -
Dere01g2161 1074 Pfam Ankyrin repeats (3 copies) 38 122 IPR002110 GO:0005515
Dere01g2161 1074 SMART ANK_2a 58 87 IPR002110 GO:0005515
Dere01g2161 1074 SMART ANK_2a 92 121 IPR002110 GO:0005515
Dere01g2161 1074 MobiDBLite consensus disorder prediction 960 991 - -
Dere01g2161 1074 SUPERFAMILY RCC1/BLIP-II 116 427 IPR009091 -
Dere01g2161 1074 ProSiteProfiles Ankyrin repeat profile. 92 124 IPR002110 GO:0005515
Dere01g2161 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 261 311 IPR000408 -
Dere01g2161 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 312 365 IPR000408 -
Dere01g2161 1074 PANTHER BTK-BINDING PROTEIN-RELATED 1 1072 - -
Dere01g2161 1074 Gene3D - 382 506 IPR009091 -
Dere01g2161 1074 Gene3D - 138 381 IPR009091 -
Dere01g2161 1074 MobiDBLite consensus disorder prediction 754 791 - -
Dere01g2161 1074 ProSiteProfiles Ankyrin repeat region circular profile. 58 89 - -
Dere01g2161 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 202 260 IPR000408 -
Dere01g2161 1074 ProSiteProfiles Ankyrin repeat profile. 58 90 IPR002110 GO:0005515
Dere01g2161 1074 MobiDBLite consensus disorder prediction 960 977 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2161 Dere-ChrDere01 35597279 35602998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2161 29 132 Acyl Lipid Metabolism Gene Families AT5G53470 35.849 2.22e-08 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2161 01 35597279 35602998 Dere01g2161 01 35597279 35602998 ECH