Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2148 ATGAAGACTATAGCAGACGGCAAGGACGTGGAATTCCCAAGAGACACAAAATTGCCCGAGGGTTTCACTCGTGCAAAGGAAATGGCGCGATACTGTTCGTTCCAAGCTGCAAAACATTTAGTCCTTGCCCTTTGTCAAGCTAAAATTTTAATAATGGTAAAAAGGATTAAAAGGAAGGAGAAATTGAAAAAAGAGACGCAAGCAGAGGGAAAGATGAGAGAAATAATAAGCATTCATATTGGCCAAGCTGGAATTCAGGTGGGGAATTCATGTTGGGAGCTTTATTGCCTTGAACATGGAATTCAGCCTGATGGCATGATGCCCAGTGATACCTCAGTTGGCGTTCAACATGATGCCTTTAACACCTTCTTCAGTGAGACTGGCTCTGGCAAGCATGTGCCAAGGGCTATATTTGTTGATCTGGAACCTACTGTTATTGATGAAGTAAGGTCTGGTTCTTACAGACAACTCTTTCATCCTGAGCAACTAATTTCTGGCAAGGAAGATGCTGCTAATAACTTTGCAAGGGGACATTATACTGTTGGAAGGGAAGTTGTTGACCTTTGCCTTGATCGTATCAGAAAATTAACAGACAATTGCACTGGTTTGCAAGGGTTCTTGGTTTTCAATGCTGTTGGTGGTGGGACTGGTTCTGGTTTGGGATCATTACTCTTGGAACGCTTATCTGTAGATTATGGGAAGAAGTCAAAACTTGGCTTCACCATTTATCCTTCTCCTCAGGTTTCTACTGCAGTCGTTGAACCTTACAACAGTGTCCTTTCGACTCATTCACTTCTTGAACACACTGATGTGGCTGTGCTTTTGGACAATGAAGCTATATATGATATCTGCAGAAGATCATTAGATATAGAAAGGCCAACCTACACAAACTTGAATCGCTTGATATCTCAAATTATCTCTTCCTTAACTACTTCCTTGAGATTTGACGGTGCCATTAATGTGGATATTACGGAGTTCCAGACTAATCTTGTGCCATATCCTCGTATCCATTTTATGCTCTCATCTTATGCTCCTGTAATCTCTGCTGCAAAGGCCTTCCACGAGCAGCTATCGGTTCCTGAGATCACCAGCGCTGTCTTTGAGCCATCAAGTATGATGGCTAAGTGTGACCCAAGACATGGGAAATACATGGCATGCTGCCTGATGTATCGTGGAGATGTTGTACCCAAAGATGTAAATGGTGCTGTTGCTACTATCAAGACAAAACGGACTGTCCAGTTTGTTGACTGGTGCCCTACTGGTTTCAAGTGTGGTATTAATTATCAGCCTCCAACAGTGGTACCTGGAGGTGATCTTGCCAAGGTGCAGCGTGCAGTTTGTATGATAAGCAACAACACAGCTGTAGCTGAGGTTTTCTCTCGTATTGACCACAAATTTGATCTCATGTATGCTAAGCGGGCATTTGTCCACTGGTATGTTGGTGAAGGAATGGAAGAAGGTGAATTCTCAGAAGCCCGTGAGGATCTTGCTGCTCTTGAAAAGGACTATGAAGAAGTTGGGGCAGAAGGCGTGGATGATGAAGAAGAAGATTACTGA 1557 0.4316 MKTIADGKDVEFPRDTKLPEGFTRAKEMARYCSFQAAKHLVLALCQAKILIMVKRIKRKEKLKKETQAEGKMREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTSVGVQHDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEVRSGSYRQLFHPEQLISGKEDAANNFARGHYTVGREVVDLCLDRIRKLTDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAFHEQLSVPEITSAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNGAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGVDDEEEDY 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2148 518 SUPERFAMILY Tubulin nucleotide-binding domain-like 72 315 IPR036525 -
Dere01g2148 518 FunFam Tubulin alpha chain 455 518 - -
Dere01g2148 518 FunFam Tubulin alpha chain 340 454 - -
Dere01g2148 518 SMART Tubulin_4 120 317 IPR003008 GO:0005525
Dere01g2148 518 Gene3D Helix hairpin bin 455 507 IPR023123 -
Dere01g2148 518 SUPERFAMILY Tubulin C-terminal domain-like 317 507 IPR008280 -
Dere01g2148 518 Coils Coil 489 509 - -
Dere01g2148 518 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 213 219 IPR017975 GO:0005525|GO:0005874|GO:0007017
Dere01g2148 518 Gene3D Tubulin/FtsZ, GTPase domain 72 339 IPR036525 -
Dere01g2148 518 PRINTS Tubulin signature 224 245 IPR000217 GO:0005874|GO:0007017
Dere01g2148 518 PRINTS Tubulin signature 166 177 IPR000217 GO:0005874|GO:0007017
Dere01g2148 518 PRINTS Tubulin signature 249 262 IPR000217 GO:0005874|GO:0007017
Dere01g2148 518 PRINTS Tubulin signature 124 143 IPR000217 GO:0005874|GO:0007017
Dere01g2148 518 PRINTS Tubulin signature 263 283 IPR000217 GO:0005874|GO:0007017
Dere01g2148 518 PRINTS Tubulin signature 205 223 IPR000217 GO:0005874|GO:0007017
Dere01g2148 518 PRINTS Tubulin signature 451 479 IPR000217 GO:0005874|GO:0007017
Dere01g2148 518 PRINTS Tubulin signature 81 101 IPR000217 GO:0005874|GO:0007017
Dere01g2148 518 PRINTS Tubulin signature 179 203 IPR000217 GO:0005874|GO:0007017
Dere01g2148 518 FunFam Tubulin alpha chain 72 339 - -
Dere01g2148 518 PANTHER TUBULIN 73 509 IPR000217 GO:0005874|GO:0007017
Dere01g2148 518 Gene3D - 340 454 IPR037103 -
Dere01g2148 518 Pfam Tubulin/FtsZ family, GTPase domain 74 284 IPR003008 GO:0005525
Dere01g2148 518 CDD alpha_tubulin 73 506 - -
Dere01g2148 518 SMART Tubulin_C_4 319 464 IPR018316 -
Dere01g2148 518 Pfam Tubulin C-terminal domain 334 463 IPR018316 -
Dere01g2148 518 PRINTS Alpha-tubulin signature 191 199 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dere01g2148 518 PRINTS Alpha-tubulin signature 493 509 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dere01g2148 518 PRINTS Alpha-tubulin signature 159 172 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dere01g2148 518 PRINTS Alpha-tubulin signature 345 360 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dere01g2148 518 PRINTS Alpha-tubulin signature 431 450 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dere01g2148 518 PRINTS Alpha-tubulin signature 285 297 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dere01g2148 518 PRINTS Alpha-tubulin signature 392 413 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dere01g2148 518 PRINTS Alpha-tubulin signature 456 472 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dere01g2148 518 PRINTS Alpha-tubulin signature 219 231 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dere01g2148 518 PRINTS Alpha-tubulin signature 89 104 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dere01g2148 518 PRINTS Alpha-tubulin signature 116 129 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dere01g2148 518 PRINTS Alpha-tubulin signature 232 243 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dere01g2148 518 PRINTS Alpha-tubulin signature 418 431 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2148 Dere-ChrDere01 35350889 35358667 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2148 01 35350889 35358667 Dere01g2148 01 35350889 35358667 ECH