Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2142 ATGCAAGCGCACCTTCTGGTGGGATCCATCCCCATCACTGGCTGTGGTGGCGCGTTACCCTCCATCCTCGAATCCAATCTGTTCGTCGCTGCTCCGCCGAGCTGGAGGAACCGTCGGCACCGGCGAACCCGCCACGGTTATAGGTGGAGCCCACTTATTGTAGCATCGTCTTCCTCTACGGCTATCAACGGCGACCAGAACCACTACGTCGTGTTGGGCCTTGATCAAACTGCCACCGCTGCCGATATCAAAAGGGCTTATCGCCTCCTCGCTCGTAAGTATCATCCTGATGTTAGCAAGGACTCACAAGCTGCTGAATTGTTCAAAAGCATTCGCCGTGCATATGAAGTACTCTCCAATGATGCAACAAGAATTCAGTATGATCAGGCTCTAAAATTTGGCCGGAGGCCTTACAGGGAAAAATGGAGTTACAGCACAGAATTTGATGATGAGATAAGAATGTACAGGTGGGCCAAACTGAGGCAGAAAATGCATAATGAGATATACTCGGAGCATTACAACTTCAATGAGGGCTACTACAACAGTGAAACAGAGGAGGAGGATGAAGAAGAAAAATTAGAAGAAAGGGGATCCTTTATTGAAGTTATTAGATCTGCATTTATGTCATTGTTATTGTTCCAGACATTTGGATCCCGATTGTCCCTCACGTTTAGCAGTCTAGTGGCATTGTTCGACAGGAAGCTGGATAGTGGCTATAAAATCGGCTATGTCCTGGCATGGATTTTGGGTGGTAGGGGTGGCATATTGCTAACATTATGCTTGTCATTTGCGAGTTGGGTTTGTGGAAAAACCAGTAGTAGTGTCGTTGCCCTGGTGGTGGTAGCCATGTGGGTTGGCTCCTATCTTGCAAGATATGCACCACTTCCCCAAGGTGCTCTGCTAACTCTCATTTACATGTCCATTAAGCTACAATCTGACCTAATATAA 948 0.4726 MQAHLLVGSIPITGCGGALPSILESNLFVAAPPSWRNRRHRRTRHGYRWSPLIVASSSSTAINGDQNHYVVLGLDQTATAADIKRAYRLLARKYHPDVSKDSQAAELFKSIRRAYEVLSNDATRIQYDQALKFGRRPYREKWSYSTEFDDEIRMYRWAKLRQKMHNEIYSEHYNFNEGYYNSETEEEDEEEKLEERGSFIEVIRSAFMSLLLFQTFGSRLSLTFSSLVALFDRKLDSGYKIGYVLAWILGGRGGILLTLCLSFASWVCGKTSSSVVALVVVAMWVGSYLARYAPLPQGALLTLIYMSIKLQSDLI 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2142 315 CDD DnaJ 67 120 IPR001623 -
Dere01g2142 315 Pfam DnaJ domain 67 128 IPR001623 -
Dere01g2142 315 ProSitePatterns Nt-dnaJ domain signature. 108 127 IPR018253 -
Dere01g2142 315 PRINTS DnaJ domain signature 69 87 IPR001623 -
Dere01g2142 315 PRINTS DnaJ domain signature 87 102 IPR001623 -
Dere01g2142 315 PRINTS DnaJ domain signature 103 123 IPR001623 -
Dere01g2142 315 SUPERFAMILY Chaperone J-domain 64 138 IPR036869 -
Dere01g2142 315 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Dere01g2142 315 FunFam Uncharacterized protein 64 210 - -
Dere01g2142 315 Gene3D DnaJ domain 64 209 IPR036869 -
Dere01g2142 315 SMART dnaj_3 66 123 IPR001623 -
Dere01g2142 315 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 145 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2142 Dere-ChrDere01 35310961 35313887 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2142 67 132 Miscellaneous Gene Families AT1G16680 44.928 2.79e-07 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2142 01 35310961 35313887 Dere01g2142 01 35310961 35313887 ECH