Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2079 ATGATTCTGATGCGCTTACCATCTCCTGTATATGTGGATTGGAAAGAGCTTTTTTTCGCTTTTCTTCTTGACTTAATTGCTTTGTCTGTCAATTTCAGCGTCGCACTTGAATCTCGAGAATACGATCACTGTGTTATAGAGGAGGGTCCTTTAATTGGCGGAAAACAAGTGTGCCATGCAAGCATTCCCTTTAGATGGGAGCCGAAACGAAGAGCGATAAGGAATCGATATCAAAATGCCGCAACCCGGCTAAGAAACCTGGACCAGTCACAAAAGATCATGTTCTGCTGGCATCCCAGGAGACCAGGGAAGGGAGGGAGCAAAGGATACGTACTCTTCTTTGATTCGGCAAACGCTGGAATTATAGATTATGCCCAGATTGAAGCTGCTCTCTCCGCGCTTCATATACCATATGAACATAACTATGCCAAGGACTTTTTAAATGCTTGTGATGCTAATAAAGATGGGCGAGTTTATTATCAGGAGTTTAAGAGATGCATTTTGCCCGAGGAGCTCCGGAGGCACTGGTTAGGGCAGGAATTCAAATTGATGATGTGGAACTTGCCCTTTTTTGTCAAGCGTGTTGACAAGGACAATAATGGGGTTATAACATTTGAAGAATGGAGGGATTTTCTCCTGCTATACCCTCATGAGGCAACTTATGACAACATTCCCCGTTATTTGGGGTGTGTATGCCATGTTGATATTGGGGAACGAATTGTTATTCCTGCAGGCATCAATAAGCAAATCCATGCAAGTAAATATCTGATAGCAGGAGGAGTAGTAGGAGCAGCATCACGCACAGCAACTGCACCCCTTGATCGTTTAAAGGTTGTTCTACAAGTCCAAACAACGCAAGCTCATATAATGCCTGCACTAAAAAATATATGGAGAGAAAGCGGTTTCTTGGGATTTTTTCTAGGCAATGGCTTAAATGTCCTCAAGGTGGCCCCTGAGAGTGGTATAAGATTTTATACTTGTGAGATGCTTAAAACTTGCATTGTGAATGCTAACGGAGATGAGGGAAATTCTGATATTGGAACTATTGGGTGCGCATTAGCTGGGGGTATAGCTCAAACTGCAATATATCCAACGGACCTAGTTAAAACAAGAGCACAAACTTATGCTTTTCAAGGTGGAAGAACTCCTTATCTTGGAAACCTCTCCAAAGATATATGGGTTCAGGAAGGACCCCGTGCATTCTACACGGGCTTGACACCTCTTCTTGGGATTATTCCTTTTGCTGGTATAGATATGGCTGCGTATGAAACTTTGAAATGTTGA 1284 0.4283 MILMRLPSPVYVDWKELFFAFLLDLIALSVNFSVALESREYDHCVIEEGPLIGGKQVCHASIPFRWEPKRRAIRNRYQNAATRLRNLDQSQKIMFCWHPRRPGKGGSKGYVLFFDSANAGIIDYAQIEAALSALHIPYEHNYAKDFLNACDANKDGRVYYQEFKRCILPEELRRHWLGQEFKLMMWNLPFFVKRVDKDNNGVITFEEWRDFLLLYPHEATYDNIPRYLGCVCHVDIGERIVIPAGINKQIHASKYLIAGGVVGAASRTATAPLDRLKVVLQVQTTQAHIMPALKNIWRESGFLGFFLGNGLNVLKVAPESGIRFYTCEMLKTCIVNANGDEGNSDIGTIGCALAGGIAQTAIYPTDLVKTRAQTYAFQGGRTPYLGNLSKDIWVQEGPRAFYTGLTPLLGIIPFAGIDMAAYETLKC 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2079 427 ProSiteProfiles EF-hand calcium-binding domain profile. 193 218 IPR002048 GO:0005509
Dere01g2079 427 Gene3D - 170 238 - -
Dere01g2079 427 Pfam Mitochondrial carrier protein 352 426 IPR018108 -
Dere01g2079 427 Pfam Mitochondrial carrier protein 249 336 IPR018108 -
Dere01g2079 427 CDD EFh 142 212 IPR002048 GO:0005509
Dere01g2079 427 PRINTS Mitochondrial carrier protein signature 268 282 IPR002067 GO:0055085
Dere01g2079 427 PRINTS Mitochondrial carrier protein signature 255 268 IPR002067 GO:0055085
Dere01g2079 427 PRINTS Mitochondrial carrier protein signature 308 328 IPR002067 GO:0055085
Dere01g2079 427 PRINTS Mitochondrial carrier protein signature 357 375 IPR002067 GO:0055085
Dere01g2079 427 ProSiteProfiles Solute carrier (Solcar) repeat profile. 342 427 IPR018108 -
Dere01g2079 427 Gene3D Mitochondrial carrier domain 245 427 IPR023395 -
Dere01g2079 427 SUPERFAMILY EF-hand 113 222 IPR011992 -
Dere01g2079 427 ProSitePatterns EF-hand calcium-binding domain. 196 208 IPR018247 -
Dere01g2079 427 PANTHER SOLUTE CARRIER FAMILY 25 208 426 - -
Dere01g2079 427 ProSiteProfiles Solute carrier (Solcar) repeat profile. 250 333 IPR018108 -
Dere01g2079 427 Pfam EF hand 194 211 IPR002048 GO:0005509
Dere01g2079 427 SUPERFAMILY Mitochondrial carrier 248 426 IPR023395 -
Dere01g2079 427 Gene3D - 111 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2079 Dere-ChrDere01 34788075 34790436 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2079 113 426 EF-hand Containing Proteins AT5G07320 57.270 9.25e-121 358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2079 01 34788075 34790436 Dere01g2079 01 34788075 34790436 ECH