Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2062 ATGTTGAGGGTTGCAAGCAGGAGGCTTTCGTCTCTCTCCTCATCTACATGGAGAGCCGACCAGGCAACATCGGCTTTCTATTCTCGAAACCCTATCAAAGCCGGTGGTCCTTCCTCATCCGATCACAACAGATCCTGTGCCGGTTCCCACCCTTTTTCTCCCAGACCTGACTTCCTCGTTCCCTTCAGAGGTTTTGCTACTGACACATTGGTCCATACGAAAGAAAATAGCATTATTCCCGATATTCCACCAACTGTTGCTGCTATTAAGAACCCTACTTCTAAGATAGTTTATGATGAGCACAACCATGAACGATTTCCTCCAGGAGACCCAAGCAAGAGGGCGTTTGCCTACTTTGTGCTAACAGGTGGTAGGTTTGTCTATGCCTCTCTAGTCCGTCTCCTTATCCTCAAGTTTGTGCTCAGCATGTCAGCTAGTAAGGATGTTCTCGCACTGGCTTCACTTGAGGTTGATCTCTCTGGCATTGAGCCTGGCTCTACAGTGACTGTTAAGTGGCGTGGAAAGCCTGTTTTCATCCGCCGTCGAACAGAGGATGATATTAAGGTGGCAAACAGTGTTGATGTTGGATCTCTTCGTGACCCCCAGCAGGATTCAGAGAGAGTCAAGAACCCAGAATGGCTTATTGTGATTGGGGTTTGCACTCATTTGGGTTGCATTCCCCTGCCAAATGCTGGTGACTTTGGTGGATGGTTTTGCCCGTGCCATGGTTCACATTATGATGTTTCTGGCAGAATTAGGAAGGGGCCAGCACCTTACAATCTGGAGGTACCGACTTATACCTTCTTGGAGGAGAATAAGTTGATGATCGGTTGA 834 0.4808 MLRVASRRLSSLSSSTWRADQATSAFYSRNPIKAGGPSSSDHNRSCAGSHPFSPRPDFLVPFRGFATDTLVHTKENSIIPDIPPTVAAIKNPTSKIVYDEHNHERFPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSGIEPGSTVTVKWRGKPVFIRRRTEDDIKVANSVDVGSLRDPQQDSERVKNPEWLIVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDVSGRIRKGPAPYNLEVPTYTFLEENKLMIG 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2062 277 Pfam Rieske [2Fe-2S] domain 162 263 IPR017941 GO:0051537
Dere01g2062 277 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 84 277 IPR014349 GO:0051537
Dere01g2062 277 Pfam Ubiquinol cytochrome reductase transmembrane region 105 148 IPR004192 GO:0008121
Dere01g2062 277 CDD Rieske_cytochrome_bc1 154 277 - -
Dere01g2062 277 PRINTS Rieske 2Fe-2S subunit signature 249 261 IPR005805 GO:0016020|GO:0051537
Dere01g2062 277 PRINTS Rieske 2Fe-2S subunit signature 237 249 IPR005805 GO:0016020|GO:0051537
Dere01g2062 277 PRINTS Rieske 2Fe-2S subunit signature 215 226 IPR005805 GO:0016020|GO:0051537
Dere01g2062 277 NCBIfam ubiquinol-cytochrome c reductase iron-sulfur subunit 127 277 IPR006317 GO:0008121
Dere01g2062 277 SUPERFAMILY ISP domain 139 276 IPR036922 GO:0051537
Dere01g2062 277 FunFam Cytochrome b-c1 complex subunit Rieske, mitochondrial 147 277 - -
Dere01g2062 277 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 207 275 IPR017941 GO:0051537
Dere01g2062 277 MobiDBLite consensus disorder prediction 28 49 - -
Dere01g2062 277 SUPERFAMILY ISP transmembrane anchor 94 150 - -
Dere01g2062 277 Gene3D - 146 277 IPR036922 GO:0051537
Dere01g2062 277 MobiDBLite consensus disorder prediction 28 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2062 Dere-ChrDere01 34653967 34656480 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2062 01 34653967 34656480 Dere01g2062 01 34653967 34656480 ECH