Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1960 ATGATGGATAAGGTGACGCAATATGAGCGTGTGTTTGATCACTTTGACGAAGATGGAGATGGGAGGATATCGCCAAAGGAGCTGCGGCAATGCGTGGAGGCGGTAGGCGGGGAGATGTCGGCGGAAGAGGCGGAGGCGGCCGTGGAGTATTTGGACGCCGACGGAGATGGGCTGGTGGGGTTGGACGATTTTGTGAGGTTCGTGGAGGGAGGGAATGAGGAAGAGAAAGTGAATGACTTGAGAGAGGCGTTTAAGATGTATGCCATGGAAGAAAGTGGGTGTATTACTCCCAAAAGTCTAAACAGGATGCTTAGCAGATTAGGTCAGTCCAGAAGTATAGATGAGTGTCGAGTTATGATCTCTAGATTTGATCTTAACGGTGATGGGGTCCTCACTTTTGATGAATTTAGGGTCATGATGTTGTAA 426 0.4906 MMDKVTQYERVFDHFDEDGDGRISPKELRQCVEAVGGEMSAEEAEAAVEYLDADGDGLVGLDDFVRFVEGGNEEEKVNDLREAFKMYAMEESGCITPKSLNRMLSRLGQSRSIDECRVMISRFDLNGDGVLTFDEFRVMML 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1960 141 ProSiteProfiles EF-hand calcium-binding domain profile. 39 74 IPR002048 GO:0005509
Dere01g1960 141 ProSitePatterns EF-hand calcium-binding domain. 124 136 IPR018247 -
Dere01g1960 141 Pfam EF-hand domain pair 8 68 IPR002048 GO:0005509
Dere01g1960 141 ProSiteProfiles EF-hand calcium-binding domain profile. 111 141 IPR002048 GO:0005509
Dere01g1960 141 Gene3D - 74 141 - -
Dere01g1960 141 SMART efh_1 7 35 IPR002048 GO:0005509
Dere01g1960 141 SMART efh_1 43 71 IPR002048 GO:0005509
Dere01g1960 141 SMART efh_1 79 107 IPR002048 GO:0005509
Dere01g1960 141 SMART efh_1 115 141 IPR002048 GO:0005509
Dere01g1960 141 FunFam Calcium-binding protein CML38 72 141 - -
Dere01g1960 141 ProSitePatterns EF-hand calcium-binding domain. 16 28 IPR018247 -
Dere01g1960 141 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 79 140 - -
Dere01g1960 141 ProSitePatterns EF-hand calcium-binding domain. 52 64 IPR018247 -
Dere01g1960 141 Gene3D - 1 73 - -
Dere01g1960 141 Pfam EF-hand domain pair 91 140 IPR002048 GO:0005509
Dere01g1960 141 ProSiteProfiles EF-hand calcium-binding domain profile. 75 110 IPR002048 GO:0005509
Dere01g1960 141 ProSiteProfiles EF-hand calcium-binding domain profile. 3 38 IPR002048 GO:0005509
Dere01g1960 141 CDD EFh 7 68 IPR002048 GO:0005509
Dere01g1960 141 FunFam Putative calcium-binding protein CML19 3 71 - -
Dere01g1960 141 CDD EFh 79 140 IPR002048 GO:0005509
Dere01g1960 141 SUPERFAMILY EF-hand 6 141 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1960 Dere-ChrDere01 33795336 33795761 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1960 3 140 EF-hand Containing Proteins AT1G76650 50.725 2.26e-44 142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g1960 01 33795336 33795761 Dere01g1960 01 33795336 33795761 ECH