Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1941 ATGATCAACGAGTATGAGTTTGTAAATCAATTCTGCCCCATTTCTTTTTGCTATGTGTTGTGCAAAGGGGGTGACAGAGATTATAGTCAATCGAATGAAGCCTTAGTTTTGTGCCACGTACGCTTGAAGAAGACACCCTTCTGGTCCCTGGGGATCGTTACAACTTACTACAAGGCTGCCACAACAATGACCACTATTGCTGAAGCTGTTGCATTCAGTTTATTCTTACGAAAGGCTGTCTTCGCGTTTGCCTGGCCTTTCTCTGGAAATCAGCGGTCGCATGCACGATGCCGCCGCACTTACAGTCAACCCCACCAAATCCTCACTCTCACACTTAATTGCGCAGAATATGGTACCCTCCTTCGGCTATTTCACCTCATTCTTTCAACGTCTACTATAATATTACTGCCTGCACCGCTGTTACTCTCTCTTATTCGTTTCAGGATCTCGGAGATAGCCATGGGTGGGAAGATCAAGATTGGAATCAATGGATTTGGAAGGATTGGCCGTTTAGTTGCCAGGGTGGCTTTGCAGAGAGATGATGTTGAGCTCGTTGCTGTTAACGATCCATTCATCACCACAGATTACATGACTTACATGTTCAAGTACGATACTGTTCATGGGCAGTGGAAACACCATGACATTAAGGTGAAGGACTCCAAAACCCTTCTCTTTGGTGACAAGCCAGTCTCTGTTTTCGGTGTCAAGAACCCGGAGGAAATTCCATGGGGTGAGGCTGGAGCTGACTTTGTGGTTGAGTCTACTGGAGTTTTCACTGACAAAGACAAGGCAGCTGCTCACTTGAAGGGTGGTGCAAAGAAGGTAATCATTTCTGCACCCAGCAAGGATGCCCCAATGTTTGTTGTTGGAGTGAATGAAAAAGAATACAAGCAAGATCTTAATATTGTTTCCAATGCTAGCTGCACAACCAACTGTCTTGCTCCACTGGCAAAGGTTATTCACGACAAATTTGGTATTGTTGAAGGTCTCATGACCACTGTGCACTCTATTACTGCCACTCAAAAGACTGTTGATGGACCATCAATGAAGGACTGGAGAGGTGGTAGAGCTGCTTCCTTCAACATCATTCCTAGCAGTACGGGTGCTGCTAAGGCTGTAGGCAAGGTGTTGCCGTCACTGAATGGAAAGTTGACGGGAATGGCTTTCCGTGTTCCTACAGTGGATGTTTCAGTGGTTGACCTCACTGTTAGAATTGAGAAGGGAGCAAGTTATGATGAGATTAAAGCTGCTATCAAGGAGGCGTCTGAAGGCAGCTTGAAGGGAATTCTTGGTTACACAGAGGATGATGTGGTGTCCACCGATTTTATCGGTGACTGCAGGTCAAGCATTTTTGACGCAAAGGCTGGAATTTCTTTGAGCAACAATTTTGTGAAGCTTGTCTCTTGGTATGACAATGAATGGGGCTACAGTTCCCGTGTGATTGACCTGATCCGACACATCGCCTCAGGGAAAAGGGTAAAACTGGTTGTTCTATTGGCTCGGGTTTCTACCCATTTGGATCTCGGGTTACCGTTTTTCTTCTACCCGCTGCACTCTTCCAGTCCAAGTTTGGAACCGGAAGCAGCCATTGAAGGCAAGCAAGTAGAACAAACCGCCAAGACAGACATATCGATATCTGGATTCTTTTCTTCTTGCTCTTCTTACTTGAAATCGGTTGCATGCCAACGAACTTTTGCCACTGGGAAGGCAAATAAAGGATCTAAAGGGGGTGGGCCAGCTGATGCATCCAAAGCATCAGCTCTTAGCAAAGAAGTCAAATCAACTACAGTGGTTGGGGCTAAAATTCTCAAGGATGGAGCTGACCCAAAAATCCAGCCTGATTCTGAATACGCGGACTGGCTGTGGCATTTGCTTGATAAACGCCCAGCACCAAGTGAATTACGTAGGAAGAATATTGAAACACTTTCTTATGAAGATCTCAAACGCTTTGTTAAGCTGGATAATCGGGCAAGAATCAAGGAGAATAACTCTGTCAAGGCCAAGAACTGA 2010 0.4557 MINEYEFVNQFCPISFCYVLCKGGDRDYSQSNEALVLCHVRLKKTPFWSLGIVTTYYKAATTMTTIAEAVAFSLFLRKAVFAFAWPFSGNQRSHARCRRTYSQPHQILTLTLNCAEYGTLLRLFHLILSTSTIILLPAPLLLSLIRFRISEIAMGGKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHHDIKVKDSKTLLFGDKPVSVFGVKNPEEIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKEYKQDLNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMAFRVPTVDVSVVDLTVRIEKGASYDEIKAAIKEASEGSLKGILGYTEDDVVSTDFIGDCRSSIFDAKAGISLSNNFVKLVSWYDNEWGYSSRVIDLIRHIASGKRVKLVVLLARVSTHLDLGLPFFFYPLHSSSPSLEPEAAIEGKQVEQTAKTDISISGFFSSCSSYLKSVACQRTFATGKANKGSKGGGPADASKASALSKEVKSTTVVGAKILKDGADPKIQPDSEYADWLWHLLDKRPAPSELRRKNIETLSYEDLKRFVKLDNRARIKENNSVKAKN 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1941 669 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 302 320 IPR020831 GO:0016620
Dere01g1941 669 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 329 345 IPR020831 GO:0016620
Dere01g1941 669 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 386 403 IPR020831 GO:0016620
Dere01g1941 669 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 267 280 IPR020831 GO:0016620
Dere01g1941 669 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 426 441 IPR020831 GO:0016620
Dere01g1941 669 Gene3D - 158 486 - -
Dere01g1941 669 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 158 261 IPR020828 GO:0051287
Dere01g1941 669 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 157 489 IPR020831 GO:0016620
Dere01g1941 669 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 159 482 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Dere01g1941 669 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 307 470 - -
Dere01g1941 669 FunFam Glyceraldehyde-3-phosphate dehydrogenase 307 472 - -
Dere01g1941 669 FunFam Glyceraldehyde-3-phosphate dehydrogenase 158 317 - -
Dere01g1941 669 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 157 324 IPR036291 -
Dere01g1941 669 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 306 313 IPR020830 GO:0016620
Dere01g1941 669 SMART gp_dh_n_7 158 308 IPR020828 GO:0051287
Dere01g1941 669 Pfam Mitochondrial ribosomal protein L37 588 666 IPR013870 -
Dere01g1941 669 Gene3D Dihydrodipicolinate Reductase; domain 2 307 472 - -
Dere01g1941 669 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 313 470 IPR020829 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1941 Dere-ChrDere01 33584508 33592024 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g1941 01 33584508 33592024 Dere01g1941 01 33584508 33592024 ECH