Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1368 ATGCCCTACTCCGCAACTTTTCAGGGCTTTGTCAGAACCACCACTTCTGCTTCGACCCCTTTACTCACCATGTCCCTCAGGAGTCCTCTTTTCCTCTTATCCCACAGAGCTCGAAGACCACCTCTTCTATCCATTTCCATGAGACATCAAGCACTTGGGGTGAGGAGTTTTCATGTAACCCCAAAGTTAAGGTCTCAGTTTGAGGTTGTGGGCTCAGTGGCGCCTTACAGGACGGTTGAGGTGGATTGGAAAGAGAGGCAAACTGTGGGCTTCAGGCGGAGGAGCATTGCTTTGCCCTTTTGGCATCAGCAGAGCTCCAATTATGGTCGTTTTGCTTACCAGGATGTGTCTAGTGATGATTCCGATGTGGAATTGGGGTCTTCTCAGCAACAATTGGGTGGTTCATCCCTTGATAATATTGATGAGTGGAGATGGAAGTTGACCATGCTTCTTCGCAACAAAGATGAGCGAGAAGTGATATCAAGGGAGAAAAAGGACAGACGTGATTTTGAGCATCTTTCAGCTTTAGCAACTAGGATGGGTTTATATAGCCGACGATATGAAAAAGTAGTTGTCTTTAGCAAAGAACCTCTGCCAAATTACAGATCTGATCTGGATGATAAGCGTCCACAGAGAGAGGTTATCTTACCTTTTGGTGTTCATAAAGAAGTAGATTCTCATCTCATTGCTCATCTTTCTAAAAAGCCTACAAGCTTGAGAGGTTTTTTCGATAAATCCTTGCATAGAACAAGTGCTAGCATTCCTGCTGATGAAGGAATTTATGATGAGCCAGAGCCCTTGGCACAGAGTAGCAATGTCATGGAGAAAATCCTTCGACGAAAAAGTTTGCAACTGCGTTATAAACAACAAGATTGGCAGGAGTCTGCTGAAGGGCAAAAGATGCTTCAATTTAGAAGAAGTCTTCCTGCATTTAAAGCGAAGGATGCTTTATTGAAAGCCATTTCTGAGAATCAGGTTGTTGTGATCTCAGGTGAAACTGGTTGCGGTAAGACCACCCAACTTCCGCAATATATTTTAGAGTCTGAGATTGAAGCTGCACATGGAGCTGTCTGTAGCATAATTTGTACACAGCCTAGAAGAATATCTGCAATGTCTGTTTCTGAAAGAGTAGCAGCAGAACGTGGGGAGAAATTAGGAGAATCTGTTGGTTACAAGGTTAGGCTGGAGGGTATGAAAGGAAGGGATACTCGTCTTCTTTTTTGCACTACAGGTGTATTGTTGCGGAGACTACTTGTGGACAGAAATCTAAAAGGTGTAAGTCATGTCATTGTTGATGAAATTCATGAACGTGGAATGAATGAAGATTTTCTTCTTGTTGTCTTGAAGGATCTTCTTCCACGTCGTCCTGACCTGAAGTTAATTTTGATGAGTGCAACCTTAAATGCTGAGCTTTTTTCTTCATACTTTGGTGGAGCTCCAACTATGCATATACCTGGTTTTACTTATCCAGTTAGAGCACATTTTCTTGAGGATACTCTGGAAATGACTGGATATCGGTTGACTTCTTATAATCAAATTGATGATTATGGTCAAGAGAAGACATGGAAGATGCAGAAACAAGTTCAAGCTTTTAGAAAAAGAAAGACCCAGATTGCTTCTGCTGTTGAGGATGCGTTGGAAGCTGCAGATTTCAAGGGTTATAGCTTACGCTCCCAGGAGTCATTATCCTGTTGGAATCCTGATTCAATTGGTTTTAACCTTATTGAACATTTGCTTTGCCACATTGTCAAGAAAGAAAGGCCTGGTGCTATTTTGGTTTTCATGACTGGTTGGGATGACATAAACTCCTTAAAGGATCAGCTCCAAGCTCATCCTCTATTGGGTGATCCTAGCAAAGTATTGCTTCTTGCATGCCATGGCTCCATGGCCAGTTCTGAGCAGAGGTTAATATTTGAAAATCCTGAAGGAGGAGTGAGGAAAATAGTTCTTGCCACTAATATGGCTGAGACAAGTATTACCATCAATGATGTTGTCTTTGTGATTGATTGTGGAAAAGCGAAAGAGACATCTTATGATGCACTAAATAACACTCCTTGTTTACTTCCATCTTGGATCTCAAAGGCTGCTGCTCGGCAGAGAAGAGGAAGGGCAGGTCGTGTTCAACCTGGCGAATGTTACCATCTTTACCCTAGATGTGTTTATGATACGTTTGCTGATTATCAATTGCCAGAGCTTTTAAGAACACCTTTACAGTCCCTATGTCTTCAAATTAAAAGTCTAAATCTTGGAAGTATCTCAGAATTCCTATCCAGAGCTTTGCAACCACCAGAGCCTCTATCGGTTCAAAATGCTGTCGAATATTTGAAGATTATTGGGGCCTTAGATGAGGATGAAAATCTGACAATTCTAGGTCGTAACTTGTCAATGCTCCCTGTAGAGCCCAAACTTGGCAAGATGCTTATTATAGGAGCTATCTTAAACTGTTTAGATCCCATATTGACTGTTGCTGCTGGTCTGAGTGTAAGAGATCCATTCTTGATGCCGTTTGACAAGAAAGATCTTGCAGAGTCTGCCAAGGCCCAGTTTTCTGCTCATGCCTATAGTGATCATCTTGCTCTTGTTCGGGCTTACGAGGGTTGGAAAGATGCAGAAACACAGAAAGCTGGCTATGAGTACTGTTGGAGAAATTTCCTTTCTTCACAAACACTTAGGGCCATTGACTCTCTTCGAAACCAATTTTTTTACTTGCTGAAAGATATTGGTTTGGTTGATCCTAATCCTCACAACTGCAATGCATGGAGTCATGATGAGCATCTGGTTCGAGCAGTCATCTGTGCTGGTCTGTTTCCTGGAATATGCTCTGTTGTGAACAAAGAAAAGTCAATAGCACTGAAAACAATGGAGGATGGTCTGGTTCTTCTTTATGCTAACTCTGTAAATGCTGCTGTACCCAAAATTCCATTCCCGTGGCTGGTATTCAATGAAAAGGTGAAGGTAAATTCAGTTTTCCTCCGGGATTCAACTGGTATATCTGACTCAATGCTGCTCCTATTTGGCGGGAATGTGTCCAGAGGTGGACTGGATGGTCACCTGAAAATGCTGGGAGGGTATTTGGAACTTTTCATGAAACCTGAATTGGCTGAGACTTACTTAAGCCTGAAGAGGGAGCTTGAGGAATTATTACATAGAAAACTTCTGGATCCCAAGTTGGACATACGATCATATAATGAGCTTCTTTCAGCTGTCAGATTGTTGGTATCAGAGGACCAATGTGATGGCAAATTTGTCTTTGGTCGCCAGGCAGTGTCACCATCAAAGAAGGCAAAAGACTCCAAAAGTGATTCTGGTGCTGAGAGTGGTAACTATAAAAACCAACTGCAAACATTGCTTGCCAGGGCTGGACATGAACCACCGACCTACAAAACCAAACAATTGAAAAACAACCAATTCCGCTCTACCGTCATATTCAATGGCTTGAATTTTGTTGGCCAGCCTTGTAACAGCAAGAAACTAGCAGAAAAGGACGCTGCTGGTGAGGCTCTTCTATGGTTAAAGGGGGATGCACATTCATCTCGTGATGATATTGACCATATGTCTATGCTTCTCGGAAAGAAGAAGAAGAAGAATAGCAATGCTTCACTTAATGGTGCTAAAAGGGAGCTTAATGAGCTTCAATTTAAAAGATCAAGGTCTTTTAGACAATAA 3666 0.4214 MPYSATFQGFVRTTTSASTPLLTMSLRSPLFLLSHRARRPPLLSISMRHQALGVRSFHVTPKLRSQFEVVGSVAPYRTVEVDWKERQTVGFRRRSIALPFWHQQSSNYGRFAYQDVSSDDSDVELGSSQQQLGGSSLDNIDEWRWKLTMLLRNKDEREVISREKKDRRDFEHLSALATRMGLYSRRYEKVVVFSKEPLPNYRSDLDDKRPQREVILPFGVHKEVDSHLIAHLSKKPTSLRGFFDKSLHRTSASIPADEGIYDEPEPLAQSSNVMEKILRRKSLQLRYKQQDWQESAEGQKMLQFRRSLPAFKAKDALLKAISENQVVVISGETGCGKTTQLPQYILESEIEAAHGAVCSIICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGVLLRRLLVDRNLKGVSHVIVDEIHERGMNEDFLLVVLKDLLPRRPDLKLILMSATLNAELFSSYFGGAPTMHIPGFTYPVRAHFLEDTLEMTGYRLTSYNQIDDYGQEKTWKMQKQVQAFRKRKTQIASAVEDALEAADFKGYSLRSQESLSCWNPDSIGFNLIEHLLCHIVKKERPGAILVFMTGWDDINSLKDQLQAHPLLGDPSKVLLLACHGSMASSEQRLIFENPEGGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVYDTFADYQLPELLRTPLQSLCLQIKSLNLGSISEFLSRALQPPEPLSVQNAVEYLKIIGALDEDENLTILGRNLSMLPVEPKLGKMLIIGAILNCLDPILTVAAGLSVRDPFLMPFDKKDLAESAKAQFSAHAYSDHLALVRAYEGWKDAETQKAGYEYCWRNFLSSQTLRAIDSLRNQFFYLLKDIGLVDPNPHNCNAWSHDEHLVRAVICAGLFPGICSVVNKEKSIALKTMEDGLVLLYANSVNAAVPKIPFPWLVFNEKVKVNSVFLRDSTGISDSMLLLFGGNVSRGGLDGHLKMLGGYLELFMKPELAETYLSLKRELEELLHRKLLDPKLDIRSYNELLSAVRLLVSEDQCDGKFVFGRQAVSPSKKAKDSKSDSGAESGNYKNQLQTLLARAGHEPPTYKTKQLKNNQFRSTVIFNGLNFVGQPCNSKKLAEKDAAGEALLWLKGDAHSSRDDIDHMSMLLGKKKKKNSNASLNGAKRELNELQFKRSRSFRQ 1221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1368 1221 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 318 485 IPR014001 -
Dere01g1368 1221 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 427 436 IPR002464 -
Dere01g1368 1221 Gene3D - 263 486 IPR027417 -
Dere01g1368 1221 Pfam Helicase conserved C-terminal domain 575 707 IPR001650 -
Dere01g1368 1221 CDD SF2_C_RHA 565 716 - -
Dere01g1368 1221 SUPERFAMILY dsRNA-binding domain-like 1107 1183 - -
Dere01g1368 1221 SMART ultradead3 306 494 IPR014001 -
Dere01g1368 1221 SMART helicmild6 602 708 IPR001650 -
Dere01g1368 1221 SMART DRBM_3 1109 1172 IPR014720 -
Dere01g1368 1221 Pfam Double-stranded RNA binding motif 1109 1171 IPR014720 -
Dere01g1368 1221 SMART ha2_5 770 861 IPR007502 GO:0004386
Dere01g1368 1221 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 927 1009 IPR011709 -
Dere01g1368 1221 Gene3D - 750 863 - -
Dere01g1368 1221 CDD DEXHc_RHA-like 324 484 - -
Dere01g1368 1221 Pfam Helicase associated domain (HA2) 771 845 IPR007502 GO:0004386
Dere01g1368 1221 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 574 748 IPR001650 -
Dere01g1368 1221 Coils Coil 1194 1214 - -
Dere01g1368 1221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 305 936 IPR027417 -
Dere01g1368 1221 PANTHER ATP-DEPENDENT RNA HELICASE 258 1041 - -
Dere01g1368 1221 FunFam DExH-box ATP-dependent RNA helicase DExH3 570 726 - -
Dere01g1368 1221 FunFam Putative ATP-dependent RNA helicase DHX36 750 854 - -
Dere01g1368 1221 Gene3D - 1091 1175 - -
Dere01g1368 1221 Pfam DEAD/DEAH box helicase 316 469 IPR011545 GO:0003676|GO:0005524
Dere01g1368 1221 MobiDBLite consensus disorder prediction 1193 1221 - -
Dere01g1368 1221 FunFam DExH-box ATP-dependent RNA helicase DExH3 262 486 - -
Dere01g1368 1221 Gene3D - 569 726 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1368 Dere-ChrDere01 26626619 26639553 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g1368 01 26626619 26639553 Dere01g1368 01 26626619 26639553 ECH