Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g1171 ATGTGCATTAGCAGAGGCAGAGCTCAAGAGAAGAAGAAGAAGAAAAAAGAAGGAGGAGGAGGCTATTACAGTGAGAAGCCATTGAAACCTGCAAAAGCTTACTGTTATTCCAGATGGCCGGCTTCACATTTGCAGTGTGTTTCTACATCCTTTTGTCTAGCCATAAACTTAACCTCACTAGCACAAATTGCAGAGTGGCTTGCTTCTTCTTCTTCTTCTTCCATTCATTCACAGTCTCAAGCCATGTTGATCATTCTGAAAAACTCATTCCCAGTATTCCTCCTCTTGCTATCTCTAGCCATTCCATTGTCTTTATCTTCTTCAACCACAGACTTCATCTCTTGCTTGACCCATCACAACATCAACAACTTCACCAAATTCCCTGACCAGTCCTCTGCTCATAGTGGCAGCTACTTTAAGATCCTCAACTTCTCCATCCAGAACCTTCGCTTTGCACAACCCAACATCTCAAAGCCTATAGCCATTGTTCTGCCACAGAGCTTGGAGCAGCTGAAGAACAGTGTGGTGTGCAGTAGAGAATTCTCTGTTGTGATCAGAGTGAGATGTGGTGGACACAGCTATGAAGGAACTTCCTCTGTAGCCAATGATGGAGCTCCATTTGTCATCATTGACCTCATGAACTTAAACCATGTTTGGGTGGACATGGAGTCTGGGATGGCATGGGTTGAAGGTGGGGCCACTCTGGGAGAGACCTACTATGCAATCTCTCAGGCCAGCAAGGCCCATGGGTTTTCTGCTGGGTCATGCCCAACTGTGGGAGTGGGTGGGCATATTGGGGGAGGTGGGTTTGGGCTTTTGTCAAGAAAATATGGGCTTGCAGCAGATAATGTGGTGGATGCACTTCTTATAGATGCAAATGGAGATTTATTGAACAGAGAAGAAATGGGAGAAGATGTGTTCTGGGCTATTAGAGGAGGTGGGGGTGGTGTTTGGGGGATTGTGTATGCCTGGAAGATCAAGTTGCTGAAAGTGCCAGAAGTTGTAACTAGCTTCATAGTCTCTAGGACAGGCACAAAAGGTCATGTTTTAAAGCTAGTGGACAAATGGCAATATGCAGCACCAAACTTAGAAGATGACTATTATTTGTCGTGCTTTGTTGGTGCTGGCTTGCCTGAAGCTAAAACCATAGGCTTATCTGCAACCTTTAAAGGGTTCTATCTGGGTCCTAAGCACAAGGCTATATCTGCTATAAACCAAGGTTTCCCTGAACTGGGTATTCAGGAAGAAGATTGCAAAGAAATGAGTTGGATTGAGTCAATAGTTTTCTTCTCTGGCTTGAATAATGGAGCTTCAGTATCTCACTTGAAGAACAGATATCTGCAAGACAAGGAATATTTCAAGGCCAAATCAGATTTTGTGAGGACCCCTATTCCTCTTGTGGGGATAGAAACTGCTTTGAACATCCTTGAGAAGGAGCCTAAAGGGTACGTCATTTTGGACCCTTATGGAGGGATAATGCACAGAATAAGCAGTGAATCCATAGCTTTTCCTCATAGAGAAGGAAACCTTTTCACCATTCAATACCTGATCTATTGGAAAGAAGCAGATAATGACAGAAGCAGTGAGTACATTGAGTGGATAAGAGGCTTCTATGCTTCTATGACTCCCTTTGTTTCATGGGGTCCAAGGGCTGCGTATATTAATTATATGGACTTTGACCTTGGAGTAATGGCGGAACCCATTAATACAAAGCAAGCAGAGGAACAAGCCAGAGTATGGGGTGAAAGGTACTTCTTGAGTAACTATGACAGACTGGTGAAGGCCAAGACCCTGATAGATCCAAGCAACCTTTTCACTAATCAGCAGGGCATTCCTCCCGTATCTTCTTCCATCAGTGCAGTATGA 1866 0.4416 MCISRGRAQEKKKKKKEGGGGYYSEKPLKPAKAYCYSRWPASHLQCVSTSFCLAINLTSLAQIAEWLASSSSSSIHSQSQAMLIILKNSFPVFLLLLSLAIPLSLSSSTTDFISCLTHHNINNFTKFPDQSSAHSGSYFKILNFSIQNLRFAQPNISKPIAIVLPQSLEQLKNSVVCSREFSVVIRVRCGGHSYEGTSSVANDGAPFVIIDLMNLNHVWVDMESGMAWVEGGATLGETYYAISQASKAHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLIDANGDLLNREEMGEDVFWAIRGGGGGVWGIVYAWKIKLLKVPEVVTSFIVSRTGTKGHVLKLVDKWQYAAPNLEDDYYLSCFVGAGLPEAKTIGLSATFKGFYLGPKHKAISAINQGFPELGIQEEDCKEMSWIESIVFFSGLNNGASVSHLKNRYLQDKEYFKAKSDFVRTPIPLVGIETALNILEKEPKGYVILDPYGGIMHRISSESIAFPHREGNLFTIQYLIYWKEADNDRSSEYIEWIRGFYASMTPFVSWGPRAAYINYMDFDLGVMAEPINTKQAEEQARVWGERYFLSNYDRLVKAKTLIDPSNLFTNQQGIPPVSSSISAV 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g1171 621 MobiDBLite consensus disorder prediction 1 21 - -
Dere01g1171 621 Gene3D - 220 613 IPR016169 -
Dere01g1171 621 ProSiteProfiles PCMH-type FAD-binding domain profile. 155 331 IPR016166 GO:0071949
Dere01g1171 621 SUPERFAMILY FAD-binding/transporter-associated domain-like 151 332 IPR036318 GO:0050660
Dere01g1171 621 Gene3D - 334 548 - -
Dere01g1171 621 Gene3D - 111 215 IPR016167 -
Dere01g1171 621 Pfam FAD binding domain 159 297 IPR006094 GO:0050660
Dere01g1171 621 PANTHER OS08G0158400 PROTEIN 106 614 - -
Dere01g1171 621 Pfam Berberine and berberine like 552 612 IPR012951 GO:0016491|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g1171 Dere-ChrDere01 23603734 23608764 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g1171 90 615 Miscellaneous Gene Families AT4G20820 41.431 2.92e-132 396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g1171 01 23603734 23608764 Dere01g1171 01 23603734 23608764 ECH